Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3694

Experiment: Ying_all64 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3693 and GFF3694 are separated by 27 nucleotidesGFF3694 and GFF3695 are separated by 31 nucleotidesGFF3695 and GFF3696 are separated by 5 nucleotidesGFF3696 and GFF3697 overlap by 4 nucleotides GFF3693 - NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3), at 583,116 to 584,591 GFF3693 GFF3694 - NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3), at 584,619 to 586,127 GFF3694 GFF3695 - FIG003089: Probable transmembrane protein, at 586,159 to 586,485 GFF3695 GFF3696 - ADP-ribose pyrophosphatase (EC 3.6.1.13), at 586,491 to 587,099 GFF3696 GFF3697 - identified by similarity to GB:AAK22812.1; match to protein family HMM PF06676, at 587,096 to 587,569 GFF3697 Position (kb) 584 585 586 587Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 583.705 kb on - strand, within GFF3693at 583.972 kb on - strand, within GFF3693at 584.392 kb on - strand, within GFF3693at 584.499 kb on + strandat 584.500 kb on - strandat 584.600 kb on + strandat 584.600 kb on + strandat 584.601 kb on - strandat 584.601 kb on - strandat 585.144 kb on + strand, within GFF3694at 585.669 kb on + strand, within GFF3694at 585.670 kb on - strand, within GFF3694at 585.843 kb on + strand, within GFF3694at 585.945 kb on + strand, within GFF3694at 585.945 kb on + strand, within GFF3694at 585.945 kb on + strand, within GFF3694at 585.945 kb on + strand, within GFF3694at 585.948 kb on + strand, within GFF3694at 585.948 kb on + strand, within GFF3694at 585.972 kb on + strand, within GFF3694at 586.330 kb on + strand, within GFF3695at 586.330 kb on + strand, within GFF3695at 586.406 kb on - strand, within GFF3695at 586.845 kb on + strand, within GFF3696

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3
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583,705 - GFF3693 0.40 -1.9
583,972 - GFF3693 0.58 -1.9
584,392 - GFF3693 0.86 -1.4
584,499 + -1.8
584,500 - -3.2
584,600 + +0.0
584,600 + +0.7
584,601 - -2.1
584,601 - -0.5
585,144 + GFF3694 0.35 -2.2
585,669 + GFF3694 0.70 -0.7
585,670 - GFF3694 0.70 -3.8
585,843 + GFF3694 0.81 -0.1
585,945 + GFF3694 0.88 -2.2
585,945 + GFF3694 0.88 -0.1
585,945 + GFF3694 0.88 -1.1
585,945 + GFF3694 0.88 -1.4
585,948 + GFF3694 0.88 -1.4
585,948 + GFF3694 0.88 -0.1
585,972 + GFF3694 0.90 -1.7
586,330 + GFF3695 0.52 -1.4
586,330 + GFF3695 0.52 -2.4
586,406 - GFF3695 0.76 -2.4
586,845 + GFF3696 0.58 -0.2

Or see this region's nucleotide sequence