Experiment: Ying_all64 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3693 and GFF3694 are separated by 27 nucleotides GFF3694 and GFF3695 are separated by 31 nucleotides GFF3695 and GFF3696 are separated by 5 nucleotides GFF3696 and GFF3697 overlap by 4 nucleotides
GFF3693 - NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3), at 583,116 to 584,591
GFF3693
GFF3694 - NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3), at 584,619 to 586,127
GFF3694
GFF3695 - FIG003089: Probable transmembrane protein, at 586,159 to 586,485
GFF3695
GFF3696 - ADP-ribose pyrophosphatase (EC 3.6.1.13), at 586,491 to 587,099
GFF3696
GFF3697 - identified by similarity to GB:AAK22812.1; match to protein family HMM PF06676, at 587,096 to 587,569
GFF3697
Position (kb)
584
585
586
587 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 583.705 kb on - strand, within GFF3693 at 583.972 kb on - strand, within GFF3693 at 584.392 kb on - strand, within GFF3693 at 584.499 kb on + strand at 584.500 kb on - strand at 584.600 kb on + strand at 584.600 kb on + strand at 584.601 kb on - strand at 584.601 kb on - strand at 585.144 kb on + strand, within GFF3694 at 585.669 kb on + strand, within GFF3694 at 585.670 kb on - strand, within GFF3694 at 585.843 kb on + strand, within GFF3694 at 585.945 kb on + strand, within GFF3694 at 585.945 kb on + strand, within GFF3694 at 585.945 kb on + strand, within GFF3694 at 585.945 kb on + strand, within GFF3694 at 585.948 kb on + strand, within GFF3694 at 585.948 kb on + strand, within GFF3694 at 585.972 kb on + strand, within GFF3694 at 586.330 kb on + strand, within GFF3695 at 586.330 kb on + strand, within GFF3695 at 586.406 kb on - strand, within GFF3695 at 586.845 kb on + strand, within GFF3696
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3 remove 583,705 - GFF3693 0.40 -1.9 583,972 - GFF3693 0.58 -1.9 584,392 - GFF3693 0.86 -1.4 584,499 + -1.8 584,500 - -3.2 584,600 + +0.0 584,600 + +0.7 584,601 - -2.1 584,601 - -0.5 585,144 + GFF3694 0.35 -2.2 585,669 + GFF3694 0.70 -0.7 585,670 - GFF3694 0.70 -3.8 585,843 + GFF3694 0.81 -0.1 585,945 + GFF3694 0.88 -2.2 585,945 + GFF3694 0.88 -0.1 585,945 + GFF3694 0.88 -1.1 585,945 + GFF3694 0.88 -1.4 585,948 + GFF3694 0.88 -1.4 585,948 + GFF3694 0.88 -0.1 585,972 + GFF3694 0.90 -1.7 586,330 + GFF3695 0.52 -1.4 586,330 + GFF3695 0.52 -2.4 586,406 - GFF3695 0.76 -2.4 586,845 + GFF3696 0.58 -0.2
Or see this region's nucleotide sequence