Experiment: Ying_all64 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3682 and GFF3683 are separated by 54 nucleotides GFF3683 and GFF3684 are separated by 1 nucleotides GFF3684 and GFF3685 overlap by 4 nucleotides GFF3685 and GFF3686 overlap by 4 nucleotides
GFF3682 - NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3), at 571,936 to 572,415
GFF3682
GFF3683 - NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3), at 572,470 to 573,093
GFF3683
GFF3684 - NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3), at 573,095 to 574,348
GFF3684
GFF3685 - NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3), at 574,345 to 574,857
GFF3685
GFF3686 - NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3), at 574,854 to 576,227
GFF3686
Position (kb) 573
574
575 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 572.261 kb on - strand, within GFF3682 at 572.272 kb on + strand, within GFF3682 at 572.317 kb on + strand, within GFF3682 at 572.317 kb on + strand, within GFF3682 at 572.318 kb on - strand, within GFF3682 at 572.318 kb on - strand, within GFF3682 at 572.357 kb on - strand, within GFF3682 at 572.609 kb on - strand, within GFF3683 at 572.875 kb on + strand, within GFF3683 at 572.876 kb on - strand, within GFF3683 at 573.076 kb on + strand at 573.113 kb on + strand at 573.261 kb on - strand, within GFF3684 at 573.479 kb on + strand, within GFF3684 at 573.602 kb on + strand, within GFF3684 at 573.722 kb on + strand, within GFF3684 at 573.873 kb on - strand, within GFF3684 at 573.881 kb on + strand, within GFF3684 at 574.562 kb on - strand, within GFF3685 at 574.571 kb on - strand, within GFF3685 at 574.571 kb on - strand, within GFF3685 at 574.571 kb on - strand, within GFF3685 at 574.977 kb on + strand at 575.247 kb on + strand, within GFF3686 at 575.247 kb on + strand, within GFF3686 at 575.248 kb on - strand, within GFF3686 at 575.319 kb on + strand, within GFF3686 at 575.347 kb on - strand, within GFF3686
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3 remove 572,261 - GFF3682 0.68 -2.8 572,272 + GFF3682 0.70 -0.7 572,317 + GFF3682 0.79 -1.4 572,317 + GFF3682 0.79 -1.4 572,318 - GFF3682 0.80 -1.9 572,318 - GFF3682 0.80 -3.0 572,357 - GFF3682 0.88 -3.9 572,609 - GFF3683 0.22 -0.7 572,875 + GFF3683 0.65 -1.1 572,876 - GFF3683 0.65 -1.1 573,076 + -2.8 573,113 + -2.5 573,261 - GFF3684 0.13 -0.1 573,479 + GFF3684 0.31 -1.1 573,602 + GFF3684 0.40 -3.5 573,722 + GFF3684 0.50 -2.5 573,873 - GFF3684 0.62 -1.4 573,881 + GFF3684 0.63 -2.1 574,562 - GFF3685 0.42 -0.1 574,571 - GFF3685 0.44 -1.4 574,571 - GFF3685 0.44 -2.1 574,571 - GFF3685 0.44 -1.4 574,977 + -2.9 575,247 + GFF3686 0.29 -2.4 575,247 + GFF3686 0.29 -1.7 575,248 - GFF3686 0.29 -3.8 575,319 + GFF3686 0.34 -2.7 575,347 - GFF3686 0.36 -1.4
Or see this region's nucleotide sequence