Experiment: Ying_all64 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3581 and GFF3582 are separated by 117 nucleotides GFF3582 and GFF3583 are separated by 6 nucleotides
GFF3581 - Glutaminyl-tRNA synthetase (EC 6.1.1.18), at 467,486 to 469,321
GFF3581
GFF3582 - FIG00758123: hypothetical protein, at 469,439 to 470,713
GFF3582
GFF3583 - Alkaline phosphatase (EC 3.1.3.1), at 470,720 to 472,420
GFF3583
Position (kb) 469
470
471 Strain fitness (log2 ratio) -1
0
1
2 at 469.331 kb on + strand at 469.331 kb on + strand at 469.332 kb on - strand at 469.332 kb on - strand at 469.332 kb on - strand at 469.371 kb on + strand at 469.372 kb on - strand at 469.372 kb on - strand at 469.372 kb on - strand at 469.372 kb on - strand at 469.372 kb on - strand at 469.796 kb on + strand, within GFF3582 at 469.796 kb on + strand, within GFF3582 at 469.796 kb on + strand, within GFF3582 at 469.796 kb on + strand, within GFF3582 at 469.796 kb on + strand, within GFF3582 at 469.799 kb on + strand, within GFF3582 at 469.799 kb on + strand, within GFF3582 at 469.800 kb on - strand, within GFF3582 at 469.800 kb on - strand, within GFF3582 at 470.066 kb on + strand, within GFF3582 at 470.075 kb on + strand, within GFF3582 at 470.076 kb on - strand, within GFF3582 at 470.076 kb on - strand, within GFF3582 at 470.145 kb on - strand, within GFF3582 at 470.366 kb on + strand, within GFF3582 at 470.366 kb on + strand, within GFF3582 at 470.366 kb on + strand, within GFF3582 at 470.441 kb on + strand, within GFF3582 at 470.442 kb on - strand, within GFF3582 at 470.531 kb on + strand, within GFF3582 at 470.531 kb on + strand, within GFF3582 at 470.541 kb on - strand, within GFF3582 at 470.725 kb on - strand at 470.913 kb on + strand, within GFF3583 at 470.913 kb on + strand, within GFF3583 at 470.914 kb on - strand, within GFF3583 at 470.955 kb on + strand, within GFF3583 at 470.955 kb on + strand, within GFF3583 at 470.955 kb on + strand, within GFF3583 at 470.956 kb on - strand, within GFF3583 at 471.405 kb on + strand, within GFF3583 at 471.406 kb on - strand, within GFF3583 at 471.406 kb on - strand, within GFF3583 at 471.429 kb on + strand, within GFF3583 at 471.429 kb on + strand, within GFF3583 at 471.429 kb on + strand, within GFF3583 at 471.429 kb on + strand, within GFF3583 at 471.429 kb on + strand, within GFF3583 at 471.429 kb on + strand, within GFF3583 at 471.430 kb on - strand, within GFF3583 at 471.430 kb on - strand, within GFF3583 at 471.430 kb on - strand, within GFF3583 at 471.430 kb on - strand, within GFF3583 at 471.430 kb on - strand, within GFF3583 at 471.430 kb on - strand, within GFF3583 at 471.430 kb on - strand, within GFF3583 at 471.627 kb on + strand, within GFF3583 at 471.627 kb on + strand, within GFF3583 at 471.627 kb on + strand, within GFF3583 at 471.660 kb on + strand, within GFF3583 at 471.660 kb on + strand, within GFF3583 at 471.660 kb on + strand, within GFF3583 at 471.661 kb on - strand, within GFF3583 at 471.701 kb on + strand, within GFF3583 at 471.703 kb on - strand, within GFF3583 at 471.703 kb on - strand, within GFF3583 at 471.703 kb on - strand, within GFF3583 at 471.703 kb on - strand, within GFF3583
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3 remove 469,331 + +1.5 469,331 + +0.5 469,332 - +1.4 469,332 - +0.5 469,332 - +1.3 469,371 + +1.5 469,372 - -0.1 469,372 - -1.0 469,372 - +0.4 469,372 - -0.0 469,372 - -0.9 469,796 + GFF3582 0.28 -0.3 469,796 + GFF3582 0.28 +2.7 469,796 + GFF3582 0.28 +0.0 469,796 + GFF3582 0.28 +0.1 469,796 + GFF3582 0.28 -0.4 469,799 + GFF3582 0.28 -0.2 469,799 + GFF3582 0.28 +0.1 469,800 - GFF3582 0.28 +0.3 469,800 - GFF3582 0.28 +0.3 470,066 + GFF3582 0.49 -0.1 470,075 + GFF3582 0.50 -0.1 470,076 - GFF3582 0.50 +1.2 470,076 - GFF3582 0.50 -0.5 470,145 - GFF3582 0.55 -0.5 470,366 + GFF3582 0.73 +0.8 470,366 + GFF3582 0.73 -0.2 470,366 + GFF3582 0.73 +0.2 470,441 + GFF3582 0.79 -0.3 470,442 - GFF3582 0.79 -0.3 470,531 + GFF3582 0.86 -0.7 470,531 + GFF3582 0.86 -1.5 470,541 - GFF3582 0.86 -0.7 470,725 - +0.5 470,913 + GFF3583 0.11 -0.1 470,913 + GFF3583 0.11 -0.2 470,914 - GFF3583 0.11 +0.5 470,955 + GFF3583 0.14 +0.1 470,955 + GFF3583 0.14 -0.7 470,955 + GFF3583 0.14 -0.4 470,956 - GFF3583 0.14 +0.6 471,405 + GFF3583 0.40 +0.1 471,406 - GFF3583 0.40 -0.1 471,406 - GFF3583 0.40 -0.1 471,429 + GFF3583 0.42 +1.5 471,429 + GFF3583 0.42 +0.7 471,429 + GFF3583 0.42 -0.1 471,429 + GFF3583 0.42 +1.1 471,429 + GFF3583 0.42 +0.5 471,429 + GFF3583 0.42 -0.4 471,430 - GFF3583 0.42 -0.4 471,430 - GFF3583 0.42 +0.2 471,430 - GFF3583 0.42 +0.5 471,430 - GFF3583 0.42 +1.7 471,430 - GFF3583 0.42 -0.1 471,430 - GFF3583 0.42 -0.1 471,430 - GFF3583 0.42 +0.1 471,627 + GFF3583 0.53 +0.3 471,627 + GFF3583 0.53 +0.1 471,627 + GFF3583 0.53 +0.1 471,660 + GFF3583 0.55 +0.4 471,660 + GFF3583 0.55 -0.0 471,660 + GFF3583 0.55 +1.9 471,661 - GFF3583 0.55 -1.0 471,701 + GFF3583 0.58 +0.0 471,703 - GFF3583 0.58 +0.5 471,703 - GFF3583 0.58 +0.7 471,703 - GFF3583 0.58 -0.0 471,703 - GFF3583 0.58 -0.1
Or see this region's nucleotide sequence