Experiment: Ying_all64 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3553 and GFF3554 are separated by 17 nucleotides
GFF3553 - FIG00352444: hypothetical protein, at 443,430 to 443,975
GFF3553
GFF3554 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 443,993 to 445,183
GFF3554
Position (kb) 443
444 Strain fitness (log2 ratio) -2
-1
0
1
2 at 442.498 kb on - strand at 442.498 kb on - strand at 442.500 kb on + strand at 442.500 kb on + strand at 442.500 kb on + strand at 442.501 kb on - strand at 442.501 kb on - strand at 442.501 kb on - strand at 442.501 kb on - strand at 442.501 kb on - strand at 442.501 kb on - strand at 442.501 kb on - strand at 442.501 kb on - strand at 442.557 kb on + strand at 442.557 kb on + strand at 442.557 kb on + strand at 442.557 kb on + strand at 442.557 kb on + strand at 442.558 kb on - strand at 442.558 kb on - strand at 442.641 kb on + strand at 442.641 kb on + strand at 442.641 kb on + strand at 442.641 kb on + strand at 442.642 kb on - strand at 442.642 kb on - strand at 442.642 kb on - strand at 442.642 kb on - strand at 442.642 kb on - strand at 442.671 kb on + strand at 442.671 kb on + strand at 442.672 kb on - strand at 442.672 kb on - strand at 442.752 kb on + strand at 442.752 kb on + strand at 442.752 kb on + strand at 442.752 kb on + strand at 442.752 kb on + strand at 442.753 kb on - strand at 442.753 kb on - strand at 442.753 kb on - strand at 442.753 kb on - strand at 442.753 kb on - strand at 442.753 kb on - strand at 442.753 kb on - strand at 442.753 kb on - strand at 442.888 kb on + strand at 442.889 kb on - strand at 442.889 kb on - strand at 442.889 kb on - strand at 442.889 kb on - strand at 442.889 kb on - strand at 442.889 kb on - strand at 442.889 kb on - strand at 442.889 kb on - strand at 442.889 kb on - strand at 443.021 kb on + strand at 443.022 kb on - strand at 443.022 kb on - strand at 443.135 kb on + strand at 443.135 kb on + strand at 443.135 kb on + strand at 443.135 kb on + strand at 443.135 kb on + strand at 443.136 kb on - strand at 443.136 kb on - strand at 443.240 kb on + strand at 443.240 kb on + strand at 443.240 kb on + strand at 443.240 kb on + strand at 443.241 kb on - strand at 443.243 kb on - strand at 443.281 kb on - strand at 443.468 kb on - strand at 443.468 kb on - strand at 443.470 kb on + strand at 443.470 kb on + strand at 443.470 kb on + strand at 443.470 kb on + strand at 443.470 kb on + strand at 443.471 kb on - strand at 443.471 kb on - strand at 443.471 kb on - strand at 443.492 kb on - strand, within GFF3553 at 443.492 kb on - strand, within GFF3553 at 443.492 kb on - strand, within GFF3553 at 443.494 kb on - strand, within GFF3553 at 443.773 kb on + strand, within GFF3553 at 443.773 kb on + strand, within GFF3553 at 443.773 kb on + strand, within GFF3553 at 443.774 kb on - strand, within GFF3553 at 443.774 kb on - strand, within GFF3553 at 443.774 kb on - strand, within GFF3553 at 443.774 kb on - strand, within GFF3553 at 444.005 kb on + strand at 444.058 kb on - strand at 444.312 kb on + strand, within GFF3554 at 444.312 kb on + strand, within GFF3554 at 444.312 kb on + strand, within GFF3554 at 444.312 kb on + strand, within GFF3554 at 444.313 kb on - strand, within GFF3554 at 444.313 kb on - strand, within GFF3554 at 444.313 kb on - strand, within GFF3554 at 444.313 kb on - strand, within GFF3554 at 444.339 kb on + strand, within GFF3554 at 444.536 kb on + strand, within GFF3554 at 444.537 kb on + strand, within GFF3554 at 444.537 kb on + strand, within GFF3554 at 444.538 kb on - strand, within GFF3554 at 444.538 kb on - strand, within GFF3554
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3 remove 442,498 - -0.3 442,498 - -0.6 442,500 + -1.5 442,500 + -0.7 442,500 + -0.8 442,501 - +0.6 442,501 - +0.1 442,501 - -0.1 442,501 - +1.3 442,501 - +0.5 442,501 - +0.3 442,501 - -0.2 442,501 - -0.3 442,557 + -1.0 442,557 + -1.4 442,557 + +0.3 442,557 + -0.0 442,557 + -0.1 442,558 - -0.4 442,558 - +0.2 442,641 + +0.3 442,641 + +0.5 442,641 + -0.7 442,641 + -1.2 442,642 - +0.1 442,642 - +0.4 442,642 - -0.4 442,642 - +0.7 442,642 - +0.0 442,671 + -1.4 442,671 + +0.3 442,672 - -0.6 442,672 - -1.5 442,752 + -0.1 442,752 + -0.3 442,752 + -0.6 442,752 + +1.1 442,752 + +0.4 442,753 - +0.3 442,753 - +0.0 442,753 - -0.2 442,753 - -0.0 442,753 - -0.1 442,753 - -1.1 442,753 - +0.1 442,753 - +0.6 442,888 + +0.2 442,889 - -0.8 442,889 - -0.2 442,889 - -2.2 442,889 - -0.6 442,889 - +0.2 442,889 - +0.2 442,889 - -0.2 442,889 - +0.3 442,889 - +0.2 443,021 + -0.7 443,022 - -1.0 443,022 - +0.7 443,135 + +0.0 443,135 + -0.1 443,135 + -0.7 443,135 + -0.2 443,135 + -0.4 443,136 - -1.8 443,136 - -0.2 443,240 + +0.3 443,240 + +0.5 443,240 + +0.2 443,240 + -0.1 443,241 - +0.7 443,243 - -0.4 443,281 - -1.4 443,468 - -0.0 443,468 - +0.0 443,470 + +0.4 443,470 + -0.6 443,470 + -0.2 443,470 + -0.1 443,470 + +0.1 443,471 - +0.9 443,471 - +0.4 443,471 - +0.1 443,492 - GFF3553 0.11 -0.4 443,492 - GFF3553 0.11 +0.6 443,492 - GFF3553 0.11 -1.1 443,494 - GFF3553 0.12 -0.6 443,773 + GFF3553 0.63 +0.2 443,773 + GFF3553 0.63 +0.5 443,773 + GFF3553 0.63 +0.2 443,774 - GFF3553 0.63 -0.4 443,774 - GFF3553 0.63 -0.3 443,774 - GFF3553 0.63 -0.6 443,774 - GFF3553 0.63 -1.5 444,005 + -0.3 444,058 - -1.7 444,312 + GFF3554 0.27 -0.6 444,312 + GFF3554 0.27 -0.6 444,312 + GFF3554 0.27 -0.0 444,312 + GFF3554 0.27 -0.9 444,313 - GFF3554 0.27 -0.1 444,313 - GFF3554 0.27 -1.3 444,313 - GFF3554 0.27 +0.8 444,313 - GFF3554 0.27 +0.7 444,339 + GFF3554 0.29 +1.8 444,536 + GFF3554 0.46 -0.3 444,537 + GFF3554 0.46 -0.1 444,537 + GFF3554 0.46 +0.4 444,538 - GFF3554 0.46 -0.2 444,538 - GFF3554 0.46 -0.3
Or see this region's nucleotide sequence