Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3541

Experiment: Ying_all64 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3540 and GFF3541 are separated by 80 nucleotidesGFF3541 and GFF3542 are separated by 41 nucleotides GFF3540 - Copper tolerance protein, at 431,080 to 432,456 GFF3540 GFF3541 - hypothetical protein, at 432,537 to 432,893 GFF3541 GFF3542 - Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46), at 432,935 to 433,993 GFF3542 Position (kb) 432 433Strain fitness (log2 ratio) -1 0 1at 433.335 kb on + strand, within GFF3542at 433.335 kb on + strand, within GFF3542at 433.336 kb on - strand, within GFF3542at 433.624 kb on - strand, within GFF3542

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3
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433,335 + GFF3542 0.38 -0.8
433,335 + GFF3542 0.38 +0.2
433,336 - GFF3542 0.38 -0.0
433,624 - GFF3542 0.65 -1.4

Or see this region's nucleotide sequence