Experiment: Ying_all64 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF350 and GFF351 are separated by 92 nucleotides GFF351 and GFF352 are separated by 13 nucleotides GFF352 and GFF353 are separated by 109 nucleotides GFF353 and GFF354 are separated by 38 nucleotides
GFF350 - FOG: CheY-like receiver, at 13,708 to 14,670
GFF350
GFF351 - contains Pfam profile: PF01419 jacalin-like lectin domain; similar to myrosinase binding protein [Brassica napus] GI:1711296, GI:1655824, myrosinase-binding protein homolog [Arabidopsis thaliana] GI:2997767; contains Pfam profile PF01419 jacalin-like lectin family / jacalin lectin family protein, at 14,763 to 15,104
GFF351
GFF352 - hypothetical protein, at 15,118 to 16,125
GFF352
GFF353 - Organic hydroperoxide resistance protein, at 16,235 to 16,663
GFF353
GFF354 - Organic hydroperoxide resistance transcriptional regulator, at 16,702 to 17,151
GFF354
Position (kb) 15
16
17 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 15.119 kb on + strand at 15.257 kb on + strand, within GFF352 at 15.257 kb on + strand, within GFF352 at 15.258 kb on - strand, within GFF352 at 15.258 kb on - strand, within GFF352 at 15.258 kb on - strand, within GFF352 at 15.266 kb on + strand, within GFF352 at 15.266 kb on + strand, within GFF352 at 15.266 kb on + strand, within GFF352 at 15.267 kb on - strand, within GFF352 at 15.267 kb on - strand, within GFF352 at 15.267 kb on - strand, within GFF352 at 15.328 kb on + strand, within GFF352 at 15.328 kb on + strand, within GFF352 at 15.329 kb on - strand, within GFF352 at 15.377 kb on + strand, within GFF352 at 15.378 kb on - strand, within GFF352 at 15.378 kb on - strand, within GFF352 at 15.378 kb on - strand, within GFF352 at 15.410 kb on + strand, within GFF352 at 15.410 kb on + strand, within GFF352 at 15.411 kb on - strand, within GFF352 at 15.411 kb on - strand, within GFF352 at 15.875 kb on - strand, within GFF352 at 16.236 kb on + strand at 16.236 kb on + strand at 16.236 kb on + strand at 16.236 kb on + strand at 16.236 kb on + strand at 16.285 kb on - strand, within GFF353 at 16.635 kb on + strand at 16.946 kb on + strand, within GFF354 at 16.946 kb on + strand, within GFF354 at 16.946 kb on + strand, within GFF354 at 16.947 kb on - strand, within GFF354 at 16.947 kb on - strand, within GFF354 at 17.013 kb on - strand, within GFF354 at 17.021 kb on + strand, within GFF354 at 17.021 kb on + strand, within GFF354 at 17.054 kb on + strand, within GFF354 at 17.054 kb on + strand, within GFF354 at 17.054 kb on + strand, within GFF354 at 17.054 kb on + strand, within GFF354 at 17.055 kb on - strand, within GFF354 at 17.055 kb on - strand, within GFF354 at 17.085 kb on - strand, within GFF354
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3 remove 15,119 + -2.9 15,257 + GFF352 0.14 -0.6 15,257 + GFF352 0.14 -0.1 15,258 - GFF352 0.14 -0.3 15,258 - GFF352 0.14 -0.7 15,258 - GFF352 0.14 +0.7 15,266 + GFF352 0.15 -0.1 15,266 + GFF352 0.15 -0.2 15,266 + GFF352 0.15 -1.0 15,267 - GFF352 0.15 +0.1 15,267 - GFF352 0.15 -0.4 15,267 - GFF352 0.15 +0.1 15,328 + GFF352 0.21 -0.2 15,328 + GFF352 0.21 -1.0 15,329 - GFF352 0.21 -0.0 15,377 + GFF352 0.26 +0.1 15,378 - GFF352 0.26 +0.8 15,378 - GFF352 0.26 +0.4 15,378 - GFF352 0.26 -0.3 15,410 + GFF352 0.29 -0.6 15,410 + GFF352 0.29 -0.2 15,411 - GFF352 0.29 -1.6 15,411 - GFF352 0.29 +0.0 15,875 - GFF352 0.75 +0.4 16,236 + -0.2 16,236 + -0.8 16,236 + +0.4 16,236 + -0.8 16,236 + +0.1 16,285 - GFF353 0.12 -0.7 16,635 + +0.1 16,946 + GFF354 0.54 -0.4 16,946 + GFF354 0.54 -0.6 16,946 + GFF354 0.54 +0.2 16,947 - GFF354 0.54 -0.9 16,947 - GFF354 0.54 -1.1 17,013 - GFF354 0.69 -0.2 17,021 + GFF354 0.71 -0.5 17,021 + GFF354 0.71 -0.8 17,054 + GFF354 0.78 -0.4 17,054 + GFF354 0.78 -0.3 17,054 + GFF354 0.78 -1.4 17,054 + GFF354 0.78 -0.4 17,055 - GFF354 0.78 +0.8 17,055 - GFF354 0.78 -0.3 17,085 - GFF354 0.85 +1.0
Or see this region's nucleotide sequence