Experiment: Ying_all64 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3436 and GFF3437 overlap by 4 nucleotides GFF3437 and GFF3438 overlap by 4 nucleotides GFF3438 and GFF3439 overlap by 26 nucleotides GFF3439 and GFF3440 overlap by 4 nucleotides
GFF3436 - Chromosomal replication initiator protein DnaA, at 318,013 to 318,690
GFF3436
GFF3437 - Phosphoserine phosphatase (EC 3.1.3.3), at 318,687 to 319,355
GFF3437
GFF3438 - Poly(A) polymerase (EC 2.7.7.19), at 319,352 to 321,001
GFF3438
GFF3439 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3), at 320,976 to 321,458
GFF3439
GFF3440 - Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5), at 321,455 to 322,090
GFF3440
Position (kb) 319
320
321
322 Strain fitness (log2 ratio) -2
-1
0
1 at 319.532 kb on + strand, within GFF3438 at 319.533 kb on - strand, within GFF3438 at 319.533 kb on - strand, within GFF3438 at 319.682 kb on + strand, within GFF3438 at 319.683 kb on - strand, within GFF3438 at 319.733 kb on + strand, within GFF3438 at 319.904 kb on + strand, within GFF3438 at 319.904 kb on + strand, within GFF3438 at 319.905 kb on - strand, within GFF3438 at 319.905 kb on - strand, within GFF3438 at 319.907 kb on + strand, within GFF3438 at 319.908 kb on - strand, within GFF3438 at 319.908 kb on - strand, within GFF3438 at 320.235 kb on - strand, within GFF3438 at 320.235 kb on - strand, within GFF3438 at 321.456 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3 remove 319,532 + GFF3438 0.11 -2.3 319,533 - GFF3438 0.11 -0.6 319,533 - GFF3438 0.11 -1.7 319,682 + GFF3438 0.20 -1.4 319,683 - GFF3438 0.20 -1.1 319,733 + GFF3438 0.23 -0.7 319,904 + GFF3438 0.33 -2.0 319,904 + GFF3438 0.33 -0.4 319,905 - GFF3438 0.34 -0.5 319,905 - GFF3438 0.34 -0.7 319,907 + GFF3438 0.34 -1.2 319,908 - GFF3438 0.34 -1.4 319,908 - GFF3438 0.34 -1.2 320,235 - GFF3438 0.54 -2.2 320,235 - GFF3438 0.54 +1.7 321,456 + +1.5
Or see this region's nucleotide sequence