Experiment: Ying_all64 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF339 and GFF340 are separated by 17 nucleotides GFF340 and GFF341 are separated by 168 nucleotides GFF341 and GFF342 are separated by 150 nucleotides
GFF339 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 3 to 812
GFF339
GFF340 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 830 to 2,452
GFF340
GFF341 - hypothetical protein, at 2,621 to 2,938
GFF341
GFF342 - transcriptional regulator, Crp/Fnr family, at 3,089 to 3,823
GFF342
Position (kb) 0
1
2
3 Strain fitness (log2 ratio) -2
-1
0
1
2 at 0.307 kb on + strand, within GFF339 at 0.307 kb on + strand, within GFF339 at 0.634 kb on + strand, within GFF339 at 0.635 kb on - strand, within GFF339 at 0.635 kb on - strand, within GFF339 at 0.635 kb on - strand, within GFF339 at 0.936 kb on + strand at 0.936 kb on + strand at 0.937 kb on - strand at 0.937 kb on - strand at 0.937 kb on - strand at 0.937 kb on - strand at 0.981 kb on + strand at 0.982 kb on - strand at 0.982 kb on - strand at 1.152 kb on + strand, within GFF340 at 1.152 kb on + strand, within GFF340 at 1.152 kb on + strand, within GFF340 at 1.153 kb on - strand, within GFF340 at 1.153 kb on - strand, within GFF340 at 1.153 kb on - strand, within GFF340 at 1.182 kb on + strand, within GFF340 at 1.192 kb on - strand, within GFF340 at 1.329 kb on + strand, within GFF340 at 1.329 kb on + strand, within GFF340 at 1.330 kb on - strand, within GFF340 at 1.330 kb on - strand, within GFF340 at 1.450 kb on - strand, within GFF340 at 1.497 kb on + strand, within GFF340 at 1.497 kb on + strand, within GFF340 at 1.497 kb on + strand, within GFF340 at 1.497 kb on + strand, within GFF340 at 1.498 kb on - strand, within GFF340 at 1.498 kb on - strand, within GFF340 at 1.500 kb on + strand, within GFF340 at 1.500 kb on + strand, within GFF340 at 1.651 kb on - strand, within GFF340 at 1.725 kb on + strand, within GFF340 at 1.726 kb on - strand, within GFF340 at 1.726 kb on - strand, within GFF340 at 1.797 kb on + strand, within GFF340 at 1.798 kb on - strand, within GFF340 at 1.798 kb on - strand, within GFF340 at 1.968 kb on + strand, within GFF340 at 1.968 kb on + strand, within GFF340 at 1.969 kb on - strand, within GFF340 at 1.969 kb on - strand, within GFF340 at 1.969 kb on - strand, within GFF340 at 1.970 kb on + strand, within GFF340 at 1.971 kb on + strand, within GFF340 at 1.972 kb on - strand, within GFF340 at 2.061 kb on + strand, within GFF340 at 2.061 kb on + strand, within GFF340 at 2.101 kb on - strand, within GFF340 at 2.101 kb on - strand, within GFF340 at 2.349 kb on + strand at 2.350 kb on - strand at 2.377 kb on - strand at 2.379 kb on + strand at 2.379 kb on + strand at 2.379 kb on + strand at 2.380 kb on - strand at 2.380 kb on - strand at 3.004 kb on + strand at 3.004 kb on + strand at 3.005 kb on - strand at 3.061 kb on + strand at 3.061 kb on + strand at 3.285 kb on - strand, within GFF342 at 3.413 kb on + strand, within GFF342 at 3.413 kb on + strand, within GFF342 at 3.414 kb on - strand, within GFF342 at 3.419 kb on + strand, within GFF342
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3 remove 307 + GFF339 0.38 -1.8 307 + GFF339 0.38 +1.3 634 + GFF339 0.78 -0.2 635 - GFF339 0.78 -0.8 635 - GFF339 0.78 -0.1 635 - GFF339 0.78 -0.5 936 + -0.1 936 + +0.3 937 - -0.5 937 - +0.1 937 - -0.2 937 - -0.3 981 + -0.0 982 - +0.9 982 - -0.8 1,152 + GFF340 0.20 -0.1 1,152 + GFF340 0.20 -0.4 1,152 + GFF340 0.20 +0.4 1,153 - GFF340 0.20 +0.3 1,153 - GFF340 0.20 +0.3 1,153 - GFF340 0.20 +0.6 1,182 + GFF340 0.22 +1.0 1,192 - GFF340 0.22 -0.1 1,329 + GFF340 0.31 -0.3 1,329 + GFF340 0.31 -0.4 1,330 - GFF340 0.31 -0.1 1,330 - GFF340 0.31 +1.0 1,450 - GFF340 0.38 -2.0 1,497 + GFF340 0.41 -0.4 1,497 + GFF340 0.41 -0.4 1,497 + GFF340 0.41 -0.1 1,497 + GFF340 0.41 -0.1 1,498 - GFF340 0.41 +0.4 1,498 - GFF340 0.41 +0.2 1,500 + GFF340 0.41 +0.7 1,500 + GFF340 0.41 +0.1 1,651 - GFF340 0.51 +0.2 1,725 + GFF340 0.55 -1.5 1,726 - GFF340 0.55 +0.0 1,726 - GFF340 0.55 +0.7 1,797 + GFF340 0.60 +0.0 1,798 - GFF340 0.60 +1.8 1,798 - GFF340 0.60 -0.4 1,968 + GFF340 0.70 -0.1 1,968 + GFF340 0.70 -0.2 1,969 - GFF340 0.70 +0.4 1,969 - GFF340 0.70 -0.8 1,969 - GFF340 0.70 -0.4 1,970 + GFF340 0.70 -0.4 1,971 + GFF340 0.70 +0.0 1,972 - GFF340 0.70 +0.1 2,061 + GFF340 0.76 +0.3 2,061 + GFF340 0.76 +0.1 2,101 - GFF340 0.78 -0.4 2,101 - GFF340 0.78 +0.0 2,349 + -0.6 2,350 - -0.1 2,377 - +0.2 2,379 + +0.6 2,379 + +0.5 2,379 + -0.0 2,380 - -0.3 2,380 - +0.3 3,004 + -0.0 3,004 + +0.3 3,005 - +0.3 3,061 + -0.2 3,061 + +0.5 3,285 - GFF342 0.27 -0.2 3,413 + GFF342 0.44 -0.8 3,413 + GFF342 0.44 -0.8 3,414 - GFF342 0.44 +0.6 3,419 + GFF342 0.45 +1.8
Or see this region's nucleotide sequence