Experiment: Ying_all64 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3356 and GFF3357 overlap by 4 nucleotides GFF3357 and GFF3358 are separated by 71 nucleotides GFF3358 and GFF3359 are separated by 262 nucleotides
GFF3356 - Phosphoribosylanthranilate isomerase (EC 5.3.1.24), at 240,137 to 240,817
GFF3356
GFF3357 - tRNA pseudouridine synthase A (EC 4.2.1.70), at 240,814 to 241,581
GFF3357
GFF3358 - Translation initiation factor 2, at 241,653 to 244,334
GFF3358
GFF3359 - Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11), at 244,597 to 245,724
GFF3359
Position (kb) 241
242
243
244
245 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 240.712 kb on - strand, within GFF3356 at 240.712 kb on - strand, within GFF3356 at 240.712 kb on - strand, within GFF3356 at 240.869 kb on + strand at 240.869 kb on + strand at 240.869 kb on + strand at 240.869 kb on + strand at 240.869 kb on + strand at 240.887 kb on + strand at 241.058 kb on + strand, within GFF3357 at 241.059 kb on - strand, within GFF3357 at 241.059 kb on - strand, within GFF3357 at 241.059 kb on - strand, within GFF3357 at 241.265 kb on + strand, within GFF3357 at 241.266 kb on - strand, within GFF3357 at 241.266 kb on - strand, within GFF3357 at 241.266 kb on - strand, within GFF3357 at 241.266 kb on - strand, within GFF3357 at 241.559 kb on + strand at 241.574 kb on + strand at 241.574 kb on + strand at 241.575 kb on - strand at 241.575 kb on - strand at 242.396 kb on - strand, within GFF3358 at 242.477 kb on - strand, within GFF3358 at 242.477 kb on - strand, within GFF3358 at 242.528 kb on - strand, within GFF3358 at 242.528 kb on - strand, within GFF3358 at 242.630 kb on - strand, within GFF3358 at 242.630 kb on - strand, within GFF3358 at 244.061 kb on - strand, within GFF3358 at 244.061 kb on - strand, within GFF3358 at 244.061 kb on - strand, within GFF3358 at 244.350 kb on + strand at 244.350 kb on + strand at 244.350 kb on + strand at 244.350 kb on + strand at 244.351 kb on - strand at 244.429 kb on + strand at 244.451 kb on - strand at 244.465 kb on - strand at 244.465 kb on - strand at 244.465 kb on - strand at 244.465 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3 remove 240,712 - GFF3356 0.84 -0.4 240,712 - GFF3356 0.84 -1.4 240,712 - GFF3356 0.84 -1.2 240,869 + -1.1 240,869 + -2.1 240,869 + -2.4 240,869 + -0.9 240,869 + -1.1 240,887 + +0.2 241,058 + GFF3357 0.32 -1.3 241,059 - GFF3357 0.32 -2.9 241,059 - GFF3357 0.32 -0.7 241,059 - GFF3357 0.32 +0.0 241,265 + GFF3357 0.59 -1.4 241,266 - GFF3357 0.59 -1.9 241,266 - GFF3357 0.59 -0.7 241,266 - GFF3357 0.59 -3.2 241,266 - GFF3357 0.59 -1.8 241,559 + -0.5 241,574 + -0.9 241,574 + -2.1 241,575 - -1.4 241,575 - -2.2 242,396 - GFF3358 0.28 -0.6 242,477 - GFF3358 0.31 -1.1 242,477 - GFF3358 0.31 -1.1 242,528 - GFF3358 0.33 -1.1 242,528 - GFF3358 0.33 -1.4 242,630 - GFF3358 0.36 -2.2 242,630 - GFF3358 0.36 -1.9 244,061 - GFF3358 0.90 -1.4 244,061 - GFF3358 0.90 -0.9 244,061 - GFF3358 0.90 +0.2 244,350 + +0.2 244,350 + -0.7 244,350 + -0.0 244,350 + +0.2 244,351 - -0.5 244,429 + -0.5 244,451 - +0.2 244,465 - +1.4 244,465 - +0.7 244,465 - -0.1 244,465 - +0.2
Or see this region's nucleotide sequence