Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3343

Experiment: Ying_all64 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3342 and GFF3343 are separated by 509 nucleotidesGFF3343 and GFF3344 overlap by 1 nucleotides GFF3342 - HtrA protease/chaperone protein, at 226,190 to 227,686 GFF3342 GFF3343 - Translation elongation factor LepA, at 228,196 to 230,004 GFF3343 GFF3344 - Signal peptidase I (EC 3.4.21.89), at 230,004 to 230,981 GFF3344 Position (kb) 228 229 230 231Strain fitness (log2 ratio) -3 -2 -1 0 1at 227.660 kb on + strandat 227.661 kb on - strandat 227.661 kb on - strandat 227.661 kb on - strandat 227.684 kb on + strandat 227.684 kb on + strandat 227.685 kb on - strandat 227.685 kb on - strandat 227.706 kb on + strandat 227.707 kb on - strandat 227.707 kb on - strandat 227.737 kb on - strandat 227.737 kb on - strandat 227.780 kb on - strandat 227.780 kb on - strandat 227.818 kb on + strandat 227.856 kb on + strandat 227.856 kb on + strandat 227.856 kb on + strandat 227.857 kb on - strandat 227.857 kb on - strandat 227.857 kb on - strandat 227.978 kb on + strandat 227.979 kb on - strandat 228.061 kb on + strandat 228.078 kb on + strandat 228.078 kb on + strandat 228.079 kb on - strandat 228.137 kb on + strandat 228.137 kb on + strandat 228.234 kb on - strandat 228.382 kb on + strand, within GFF3343at 228.382 kb on + strand, within GFF3343at 228.382 kb on + strand, within GFF3343at 228.382 kb on + strand, within GFF3343at 228.382 kb on + strand, within GFF3343at 228.382 kb on + strand, within GFF3343at 228.383 kb on - strand, within GFF3343at 228.383 kb on - strand, within GFF3343at 228.383 kb on - strand, within GFF3343at 228.383 kb on - strand, within GFF3343at 228.383 kb on - strand, within GFF3343at 228.383 kb on - strand, within GFF3343at 228.383 kb on - strand, within GFF3343at 228.406 kb on + strand, within GFF3343at 228.406 kb on + strand, within GFF3343at 228.406 kb on + strand, within GFF3343at 228.407 kb on - strand, within GFF3343at 228.407 kb on - strand, within GFF3343at 228.407 kb on - strand, within GFF3343at 228.407 kb on - strand, within GFF3343at 228.451 kb on + strand, within GFF3343at 228.451 kb on + strand, within GFF3343at 228.452 kb on - strand, within GFF3343at 228.544 kb on + strand, within GFF3343at 228.544 kb on + strand, within GFF3343at 228.544 kb on + strand, within GFF3343at 228.545 kb on - strand, within GFF3343at 228.545 kb on - strand, within GFF3343at 228.793 kb on + strand, within GFF3343at 228.793 kb on + strand, within GFF3343at 228.794 kb on - strand, within GFF3343at 228.794 kb on - strand, within GFF3343at 228.794 kb on - strand, within GFF3343at 228.802 kb on + strand, within GFF3343at 228.802 kb on + strand, within GFF3343at 228.802 kb on + strand, within GFF3343at 228.802 kb on + strand, within GFF3343at 228.803 kb on - strand, within GFF3343at 228.803 kb on - strand, within GFF3343at 228.889 kb on + strand, within GFF3343at 228.889 kb on + strand, within GFF3343at 228.890 kb on - strand, within GFF3343at 228.890 kb on - strand, within GFF3343at 228.890 kb on - strand, within GFF3343at 228.890 kb on - strand, within GFF3343at 228.890 kb on - strand, within GFF3343at 228.890 kb on - strand, within GFF3343at 228.964 kb on + strand, within GFF3343at 228.964 kb on + strand, within GFF3343at 228.964 kb on + strand, within GFF3343at 228.964 kb on + strand, within GFF3343at 228.964 kb on + strand, within GFF3343at 228.964 kb on + strand, within GFF3343at 228.964 kb on + strand, within GFF3343at 228.965 kb on - strand, within GFF3343at 228.965 kb on - strand, within GFF3343at 228.965 kb on - strand, within GFF3343at 228.965 kb on - strand, within GFF3343at 229.078 kb on + strand, within GFF3343at 229.112 kb on - strand, within GFF3343at 229.132 kb on + strand, within GFF3343at 229.132 kb on + strand, within GFF3343at 229.133 kb on - strand, within GFF3343at 229.133 kb on - strand, within GFF3343at 229.133 kb on - strand, within GFF3343at 229.133 kb on - strand, within GFF3343at 229.189 kb on + strand, within GFF3343at 229.190 kb on - strand, within GFF3343at 229.190 kb on - strand, within GFF3343at 229.190 kb on - strand, within GFF3343at 229.259 kb on - strand, within GFF3343at 229.327 kb on + strand, within GFF3343at 229.438 kb on + strand, within GFF3343at 229.438 kb on + strand, within GFF3343at 229.438 kb on + strand, within GFF3343at 229.438 kb on + strand, within GFF3343at 229.438 kb on + strand, within GFF3343at 229.438 kb on + strand, within GFF3343at 229.438 kb on + strand, within GFF3343at 229.438 kb on + strand, within GFF3343at 229.438 kb on + strand, within GFF3343at 229.438 kb on + strand, within GFF3343at 229.438 kb on + strand, within GFF3343at 229.438 kb on + strand, within GFF3343at 229.438 kb on + strand, within GFF3343at 229.438 kb on + strand, within GFF3343at 229.439 kb on - strand, within GFF3343at 229.439 kb on - strand, within GFF3343at 229.439 kb on - strand, within GFF3343at 229.439 kb on - strand, within GFF3343at 229.439 kb on - strand, within GFF3343at 229.439 kb on - strand, within GFF3343at 229.439 kb on - strand, within GFF3343at 229.439 kb on - strand, within GFF3343at 229.453 kb on + strand, within GFF3343at 229.453 kb on + strand, within GFF3343at 229.453 kb on + strand, within GFF3343at 229.454 kb on - strand, within GFF3343at 229.454 kb on - strand, within GFF3343at 229.513 kb on + strand, within GFF3343at 229.514 kb on - strand, within GFF3343at 229.540 kb on + strand, within GFF3343at 229.540 kb on + strand, within GFF3343at 229.540 kb on + strand, within GFF3343at 229.541 kb on - strand, within GFF3343at 229.542 kb on - strand, within GFF3343at 229.606 kb on + strand, within GFF3343at 229.607 kb on - strand, within GFF3343at 229.607 kb on - strand, within GFF3343at 229.621 kb on + strand, within GFF3343at 229.621 kb on + strand, within GFF3343at 229.621 kb on + strand, within GFF3343at 229.621 kb on + strand, within GFF3343at 229.621 kb on + strand, within GFF3343at 229.621 kb on + strand, within GFF3343at 229.622 kb on - strand, within GFF3343at 229.636 kb on + strand, within GFF3343at 229.636 kb on + strand, within GFF3343at 229.636 kb on + strand, within GFF3343at 229.636 kb on + strand, within GFF3343at 229.637 kb on - strand, within GFF3343at 229.637 kb on - strand, within GFF3343at 229.637 kb on - strand, within GFF3343at 229.637 kb on - strand, within GFF3343at 229.637 kb on - strand, within GFF3343at 229.637 kb on - strand, within GFF3343at 229.637 kb on - strand, within GFF3343at 229.637 kb on - strand, within GFF3343at 229.637 kb on - strand, within GFF3343at 229.637 kb on - strand, within GFF3343at 229.873 kb on + strandat 229.873 kb on + strandat 229.873 kb on + strandat 229.874 kb on - strandat 229.874 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3
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227,660 + +0.5
227,661 - +0.3
227,661 - -0.7
227,661 - +0.5
227,684 + -0.5
227,684 + +0.2
227,685 - +0.0
227,685 - -0.5
227,706 + -0.7
227,707 - -0.5
227,707 - +0.4
227,737 - -0.5
227,737 - -0.4
227,780 - -0.6
227,780 - -0.6
227,818 + -0.5
227,856 + +0.3
227,856 + -0.5
227,856 + -0.3
227,857 - -0.3
227,857 - -0.4
227,857 - -0.1
227,978 + -0.6
227,979 - +0.7
228,061 + -0.1
228,078 + -1.4
228,078 + -0.9
228,079 - -1.3
228,137 + +0.1
228,137 + -1.0
228,234 - -1.3
228,382 + GFF3343 0.10 -2.0
228,382 + GFF3343 0.10 -1.5
228,382 + GFF3343 0.10 -2.0
228,382 + GFF3343 0.10 -2.1
228,382 + GFF3343 0.10 -0.4
228,382 + GFF3343 0.10 -0.9
228,383 - GFF3343 0.10 -1.3
228,383 - GFF3343 0.10 +1.2
228,383 - GFF3343 0.10 -1.3
228,383 - GFF3343 0.10 -0.1
228,383 - GFF3343 0.10 -1.0
228,383 - GFF3343 0.10 -0.6
228,383 - GFF3343 0.10 -0.9
228,406 + GFF3343 0.12 -1.1
228,406 + GFF3343 0.12 -0.8
228,406 + GFF3343 0.12 -2.3
228,407 - GFF3343 0.12 +0.1
228,407 - GFF3343 0.12 -1.1
228,407 - GFF3343 0.12 -0.3
228,407 - GFF3343 0.12 -1.0
228,451 + GFF3343 0.14 -0.7
228,451 + GFF3343 0.14 +1.5
228,452 - GFF3343 0.14 -0.9
228,544 + GFF3343 0.19 -0.0
228,544 + GFF3343 0.19 -1.1
228,544 + GFF3343 0.19 -1.4
228,545 - GFF3343 0.19 -0.7
228,545 - GFF3343 0.19 -1.2
228,793 + GFF3343 0.33 -1.5
228,793 + GFF3343 0.33 -1.0
228,794 - GFF3343 0.33 +0.6
228,794 - GFF3343 0.33 -0.5
228,794 - GFF3343 0.33 -1.5
228,802 + GFF3343 0.33 -1.2
228,802 + GFF3343 0.33 -1.4
228,802 + GFF3343 0.33 -0.8
228,802 + GFF3343 0.33 +0.3
228,803 - GFF3343 0.34 -0.1
228,803 - GFF3343 0.34 -0.1
228,889 + GFF3343 0.38 +0.3
228,889 + GFF3343 0.38 -1.1
228,890 - GFF3343 0.38 -0.6
228,890 - GFF3343 0.38 -1.4
228,890 - GFF3343 0.38 -1.1
228,890 - GFF3343 0.38 -1.0
228,890 - GFF3343 0.38 -1.4
228,890 - GFF3343 0.38 -0.2
228,964 + GFF3343 0.42 +1.2
228,964 + GFF3343 0.42 -0.9
228,964 + GFF3343 0.42 -0.6
228,964 + GFF3343 0.42 -0.3
228,964 + GFF3343 0.42 -1.4
228,964 + GFF3343 0.42 -1.7
228,964 + GFF3343 0.42 -1.2
228,965 - GFF3343 0.43 -0.3
228,965 - GFF3343 0.43 -1.2
228,965 - GFF3343 0.43 +0.6
228,965 - GFF3343 0.43 -0.3
229,078 + GFF3343 0.49 -1.2
229,112 - GFF3343 0.51 -0.1
229,132 + GFF3343 0.52 -2.4
229,132 + GFF3343 0.52 -2.1
229,133 - GFF3343 0.52 -2.0
229,133 - GFF3343 0.52 -1.7
229,133 - GFF3343 0.52 -0.3
229,133 - GFF3343 0.52 -0.7
229,189 + GFF3343 0.55 -1.3
229,190 - GFF3343 0.55 -0.7
229,190 - GFF3343 0.55 -1.9
229,190 - GFF3343 0.55 -1.7
229,259 - GFF3343 0.59 -1.4
229,327 + GFF3343 0.63 -1.1
229,438 + GFF3343 0.69 -0.1
229,438 + GFF3343 0.69 +0.4
229,438 + GFF3343 0.69 -1.3
229,438 + GFF3343 0.69 -0.7
229,438 + GFF3343 0.69 -0.1
229,438 + GFF3343 0.69 -2.4
229,438 + GFF3343 0.69 -1.3
229,438 + GFF3343 0.69 -1.1
229,438 + GFF3343 0.69 -2.4
229,438 + GFF3343 0.69 -0.6
229,438 + GFF3343 0.69 -2.9
229,438 + GFF3343 0.69 -1.1
229,438 + GFF3343 0.69 -0.7
229,438 + GFF3343 0.69 -0.3
229,439 - GFF3343 0.69 -1.1
229,439 - GFF3343 0.69 +0.3
229,439 - GFF3343 0.69 -0.2
229,439 - GFF3343 0.69 -0.3
229,439 - GFF3343 0.69 -0.6
229,439 - GFF3343 0.69 -1.7
229,439 - GFF3343 0.69 -1.3
229,439 - GFF3343 0.69 -2.1
229,453 + GFF3343 0.69 -1.0
229,453 + GFF3343 0.69 -2.3
229,453 + GFF3343 0.69 -1.3
229,454 - GFF3343 0.70 -1.0
229,454 - GFF3343 0.70 -0.7
229,513 + GFF3343 0.73 -0.2
229,514 - GFF3343 0.73 -1.0
229,540 + GFF3343 0.74 -0.8
229,540 + GFF3343 0.74 -0.8
229,540 + GFF3343 0.74 -0.7
229,541 - GFF3343 0.74 -2.1
229,542 - GFF3343 0.74 -0.7
229,606 + GFF3343 0.78 -1.3
229,607 - GFF3343 0.78 -0.9
229,607 - GFF3343 0.78 -1.3
229,621 + GFF3343 0.79 -0.8
229,621 + GFF3343 0.79 -0.6
229,621 + GFF3343 0.79 -0.5
229,621 + GFF3343 0.79 -1.4
229,621 + GFF3343 0.79 -0.4
229,621 + GFF3343 0.79 -1.6
229,622 - GFF3343 0.79 -0.4
229,636 + GFF3343 0.80 -1.5
229,636 + GFF3343 0.80 -0.1
229,636 + GFF3343 0.80 -1.4
229,636 + GFF3343 0.80 -1.4
229,637 - GFF3343 0.80 -0.1
229,637 - GFF3343 0.80 +0.9
229,637 - GFF3343 0.80 +0.9
229,637 - GFF3343 0.80 -0.4
229,637 - GFF3343 0.80 -0.1
229,637 - GFF3343 0.80 -0.4
229,637 - GFF3343 0.80 -0.1
229,637 - GFF3343 0.80 -1.5
229,637 - GFF3343 0.80 -0.4
229,637 - GFF3343 0.80 -1.0
229,873 + -1.2
229,873 + -0.7
229,873 + -1.5
229,874 - -1.7
229,874 - -0.7

Or see this region's nucleotide sequence