Experiment: Ying_all64 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3246 and GFF3247 are separated by 61 nucleotides GFF3247 and GFF3248 are separated by 19 nucleotides GFF3248 and GFF3249 are separated by 208 nucleotides GFF3249 and GFF3250 are separated by 363 nucleotides
GFF3246 - Zn-dependent hydrolases, including glyoxylases, at 128,172 to 129,041
GFF3246
GFF3247 - major facilitator superfamily MFS_1, at 129,103 to 129,444
GFF3247
GFF3248 - Sulfate permease, at 129,464 to 131,098
GFF3248
GFF3249 - Transcriptional regulator, ArsR family, at 131,307 to 131,630
GFF3249
GFF3250 - Integrase, at 131,994 to 133,289
GFF3250
Position (kb) 129
130
131
132 Strain fitness (log2 ratio) -2
-1
0
1 at 128.628 kb on + strand, within GFF3246 at 128.680 kb on - strand, within GFF3246 at 128.727 kb on + strand, within GFF3246 at 128.727 kb on + strand, within GFF3246 at 128.728 kb on - strand, within GFF3246 at 128.728 kb on - strand, within GFF3246 at 128.790 kb on + strand, within GFF3246 at 128.790 kb on + strand, within GFF3246 at 128.791 kb on - strand, within GFF3246 at 128.791 kb on - strand, within GFF3246 at 128.814 kb on + strand, within GFF3246 at 128.814 kb on + strand, within GFF3246 at 128.814 kb on + strand, within GFF3246 at 128.814 kb on + strand, within GFF3246 at 128.815 kb on - strand, within GFF3246 at 129.504 kb on + strand at 129.750 kb on + strand, within GFF3248 at 129.769 kb on - strand, within GFF3248 at 129.898 kb on - strand, within GFF3248 at 130.031 kb on - strand, within GFF3248 at 130.149 kb on + strand, within GFF3248 at 130.149 kb on + strand, within GFF3248 at 130.149 kb on + strand, within GFF3248 at 130.150 kb on - strand, within GFF3248 at 130.150 kb on - strand, within GFF3248 at 130.150 kb on - strand, within GFF3248 at 130.812 kb on + strand, within GFF3248 at 130.812 kb on + strand, within GFF3248 at 130.812 kb on + strand, within GFF3248 at 130.813 kb on - strand, within GFF3248 at 130.813 kb on - strand, within GFF3248 at 130.813 kb on - strand, within GFF3248 at 130.813 kb on - strand, within GFF3248 at 130.896 kb on - strand, within GFF3248 at 130.900 kb on - strand, within GFF3248 at 131.007 kb on + strand at 131.034 kb on + strand at 131.035 kb on - strand at 131.035 kb on - strand at 131.073 kb on + strand at 131.074 kb on - strand at 131.074 kb on - strand at 131.151 kb on + strand at 131.151 kb on + strand at 131.255 kb on + strand at 131.255 kb on + strand at 131.256 kb on - strand at 131.256 kb on - strand at 131.256 kb on - strand at 131.257 kb on + strand at 131.267 kb on + strand at 131.272 kb on + strand at 131.273 kb on - strand at 131.556 kb on + strand, within GFF3249 at 131.556 kb on + strand, within GFF3249 at 131.557 kb on - strand, within GFF3249 at 131.559 kb on + strand, within GFF3249 at 131.559 kb on + strand, within GFF3249 at 131.560 kb on - strand, within GFF3249 at 131.613 kb on + strand at 131.613 kb on + strand at 131.613 kb on + strand at 131.613 kb on + strand at 131.613 kb on + strand at 131.613 kb on + strand at 131.613 kb on + strand at 131.613 kb on + strand at 131.613 kb on + strand at 131.614 kb on - strand at 131.614 kb on - strand at 131.614 kb on - strand at 131.614 kb on - strand at 131.614 kb on - strand at 131.614 kb on - strand at 131.614 kb on - strand at 131.614 kb on - strand at 131.614 kb on - strand at 131.704 kb on + strand at 131.704 kb on + strand at 131.704 kb on + strand at 131.705 kb on - strand at 131.705 kb on - strand at 131.803 kb on + strand at 131.803 kb on + strand at 131.995 kb on + strand at 132.049 kb on + strand at 132.049 kb on + strand at 132.050 kb on - strand at 132.071 kb on + strand at 132.072 kb on - strand at 132.072 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3 remove 128,628 + GFF3246 0.52 -0.2 128,680 - GFF3246 0.58 -1.5 128,727 + GFF3246 0.64 -0.1 128,727 + GFF3246 0.64 -0.6 128,728 - GFF3246 0.64 -0.3 128,728 - GFF3246 0.64 +0.9 128,790 + GFF3246 0.71 +0.4 128,790 + GFF3246 0.71 -0.5 128,791 - GFF3246 0.71 +0.3 128,791 - GFF3246 0.71 -0.8 128,814 + GFF3246 0.74 +0.5 128,814 + GFF3246 0.74 -0.2 128,814 + GFF3246 0.74 +0.1 128,814 + GFF3246 0.74 -0.3 128,815 - GFF3246 0.74 +0.0 129,504 + -0.3 129,750 + GFF3248 0.17 -0.3 129,769 - GFF3248 0.19 +0.7 129,898 - GFF3248 0.27 -0.0 130,031 - GFF3248 0.35 +0.5 130,149 + GFF3248 0.42 +0.2 130,149 + GFF3248 0.42 -0.3 130,149 + GFF3248 0.42 -0.2 130,150 - GFF3248 0.42 +0.3 130,150 - GFF3248 0.42 +0.9 130,150 - GFF3248 0.42 -0.4 130,812 + GFF3248 0.82 +0.3 130,812 + GFF3248 0.82 +0.5 130,812 + GFF3248 0.82 -0.0 130,813 - GFF3248 0.83 -0.4 130,813 - GFF3248 0.83 -0.7 130,813 - GFF3248 0.83 +0.4 130,813 - GFF3248 0.83 +0.9 130,896 - GFF3248 0.88 -0.5 130,900 - GFF3248 0.88 +0.1 131,007 + +0.3 131,034 + +0.3 131,035 - +0.6 131,035 - -0.9 131,073 + +0.0 131,074 - -0.9 131,074 - -1.1 131,151 + -0.4 131,151 + -1.1 131,255 + -0.9 131,255 + +0.2 131,256 - +0.2 131,256 - +0.8 131,256 - +0.7 131,257 + -0.2 131,267 + -0.7 131,272 + -1.9 131,273 - +1.2 131,556 + GFF3249 0.77 +0.3 131,556 + GFF3249 0.77 -0.1 131,557 - GFF3249 0.77 -0.0 131,559 + GFF3249 0.78 +0.2 131,559 + GFF3249 0.78 +1.0 131,560 - GFF3249 0.78 -0.1 131,613 + +0.7 131,613 + +0.1 131,613 + -0.6 131,613 + +0.1 131,613 + +0.8 131,613 + -0.7 131,613 + +0.9 131,613 + -0.3 131,613 + +0.1 131,614 - +0.7 131,614 - +0.1 131,614 - +1.4 131,614 - +0.9 131,614 - -0.1 131,614 - +0.3 131,614 - +0.1 131,614 - +0.4 131,614 - -0.6 131,704 + -0.5 131,704 + +0.4 131,704 + -0.2 131,705 - +0.1 131,705 - -0.2 131,803 + -0.2 131,803 + +0.2 131,995 + -0.0 132,049 + -0.5 132,049 + -0.4 132,050 - +0.1 132,071 + +0.1 132,072 - +0.9 132,072 - -1.1
Or see this region's nucleotide sequence