Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3226

Experiment: Ying_all64 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 3
107,970	+		GFF3225	0.19	-1.7
107,970	+		GFF3225	0.19	-0.2
107,971	-		GFF3225	0.19	+0.9
107,971	-		GFF3225	0.19	-0.9
107,971	-		GFF3225	0.19	+1.3
108,012	+		GFF3225	0.23	+0.7
108,012	+		GFF3225	0.23	-0.8
108,012	+		GFF3225	0.23	+0.3
108,036	+		GFF3225	0.25	-0.7
108,036	+		GFF3225	0.25	-0.1
108,036	+		GFF3225	0.25	-0.1
108,037	-		GFF3225	0.25	-1.6
108,045	+		GFF3225	0.26	+0.3
108,045	+		GFF3225	0.26	-0.2
108,045	+		GFF3225	0.26	-0.4
108,046	-		GFF3225	0.26	-1.3
108,046	-		GFF3225	0.26	+0.4
108,046	-		GFF3225	0.26	-1.4
108,273	+		GFF3225	0.46	-1.1
108,274	-		GFF3225	0.47	+0.1
108,274	-		GFF3225	0.47	-0.3
108,274	-		GFF3225	0.47	+0.1
108,290	+		GFF3225	0.48	+0.2
108,291	-		GFF3225	0.48	+0.1
108,291	-		GFF3225	0.48	-1.3
108,429	+		GFF3225	0.61	+0.6
108,430	-		GFF3225	0.61	+0.3
108,553	-		GFF3225	0.72	+0.5
108,726	+		GFF3225	0.88	+0.7
108,781	-				-0.1
108,799	+				+0.3
108,826	+				+1.3
108,941	+				-0.3
108,941	+				+0.6
108,942	-				-0.1
109,371	+		GFF3226	0.33	+0.7
109,371	+		GFF3226	0.33	-0.9
109,371	+		GFF3226	0.33	-0.2
109,371	+		GFF3226	0.33	-0.1
109,372	-		GFF3226	0.33	-0.0
109,372	-		GFF3226	0.33	-0.7
109,372	-		GFF3226	0.33	-0.4
109,399	-		GFF3226	0.35	-0.0
109,479	+		GFF3226	0.40	-0.5
109,530	+		GFF3226	0.44	-0.2
109,680	+		GFF3226	0.55	+0.3
109,681	-		GFF3226	0.55	-0.1
109,728	+		GFF3226	0.59	-1.7
109,911	+		GFF3226	0.72	+0.5
109,911	+		GFF3226	0.72	-0.2
109,912	-		GFF3226	0.72	+0.3
109,912	-		GFF3226	0.72	-0.3
110,038	-		GFF3226	0.82	+0.3
110,321	+				-1.1
110,500	+				+0.2
110,512	+				+0.1
110,512	+				+0.9
110,664	-				+0.4
110,805	-		GFF3227	0.54	-0.0
110,870	+		GFF3227	0.84	-0.3
110,870	+		GFF3227	0.84	-0.3
110,873	-		GFF3227	0.85	-1.3
110,873	-		GFF3227	0.85	-0.0
110,944	+				+1.7
111,176	+		GFF3228	0.21	-0.2
111,230	+		GFF3228	0.26	-0.2