Experiment: Ying_all64 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2981 and GFF2982 are separated by 113 nucleotides GFF2982 and GFF2983 are separated by 119 nucleotides GFF2983 and GFF2984 are separated by 56 nucleotides
GFF2981 - Acetolactate synthase large subunit (EC 2.2.1.6), at 58,471 to 60,231
GFF2981
GFF2982 - Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits, at 60,345 to 63,896
GFF2982
GFF2983 - Enoyl-CoA hydratase (EC 4.2.1.17), at 64,016 to 64,792
GFF2983
GFF2984 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 64,849 to 65,289
GFF2984
Position (kb) 60
61
62
63
64 Strain fitness (log2 ratio) -2
-1
0
1
2 at 59.777 kb on - strand, within GFF2981 at 60.155 kb on - strand at 60.155 kb on - strand at 60.214 kb on + strand at 60.215 kb on - strand at 60.423 kb on + strand at 60.423 kb on + strand at 60.423 kb on + strand at 60.423 kb on + strand at 60.424 kb on - strand at 60.424 kb on - strand at 60.447 kb on + strand at 60.448 kb on - strand at 60.702 kb on + strand, within GFF2982 at 60.840 kb on + strand, within GFF2982 at 60.841 kb on - strand, within GFF2982 at 60.903 kb on + strand, within GFF2982 at 60.903 kb on + strand, within GFF2982 at 60.924 kb on + strand, within GFF2982 at 60.924 kb on + strand, within GFF2982 at 60.925 kb on - strand, within GFF2982 at 60.925 kb on - strand, within GFF2982 at 61.167 kb on + strand, within GFF2982 at 61.168 kb on - strand, within GFF2982 at 61.168 kb on - strand, within GFF2982 at 61.168 kb on - strand, within GFF2982 at 61.168 kb on - strand, within GFF2982 at 61.182 kb on + strand, within GFF2982 at 61.263 kb on + strand, within GFF2982 at 61.263 kb on + strand, within GFF2982 at 61.264 kb on - strand, within GFF2982 at 61.443 kb on + strand, within GFF2982 at 61.444 kb on - strand, within GFF2982 at 61.455 kb on + strand, within GFF2982 at 61.464 kb on + strand, within GFF2982 at 61.464 kb on + strand, within GFF2982 at 61.465 kb on - strand, within GFF2982 at 61.465 kb on - strand, within GFF2982 at 61.741 kb on - strand, within GFF2982 at 61.837 kb on - strand, within GFF2982 at 61.950 kb on + strand, within GFF2982 at 61.950 kb on + strand, within GFF2982 at 61.951 kb on - strand, within GFF2982 at 61.951 kb on - strand, within GFF2982 at 61.951 kb on - strand, within GFF2982 at 61.951 kb on - strand, within GFF2982 at 61.954 kb on - strand, within GFF2982 at 61.954 kb on - strand, within GFF2982 at 61.954 kb on - strand, within GFF2982 at 62.023 kb on - strand, within GFF2982 at 62.023 kb on - strand, within GFF2982 at 62.035 kb on - strand, within GFF2982 at 62.035 kb on - strand, within GFF2982 at 63.327 kb on + strand, within GFF2982 at 63.328 kb on - strand, within GFF2982 at 63.456 kb on + strand, within GFF2982 at 63.457 kb on - strand, within GFF2982 at 63.457 kb on - strand, within GFF2982 at 63.468 kb on + strand, within GFF2982 at 63.468 kb on + strand, within GFF2982 at 63.469 kb on - strand, within GFF2982 at 63.549 kb on + strand at 63.549 kb on + strand at 63.550 kb on - strand at 63.550 kb on - strand at 63.550 kb on - strand at 63.727 kb on - strand at 64.347 kb on + strand, within GFF2983 at 64.348 kb on - strand, within GFF2983 at 64.348 kb on - strand, within GFF2983 at 64.348 kb on - strand, within GFF2983 at 64.372 kb on - strand, within GFF2983 at 64.419 kb on - strand, within GFF2983 at 64.808 kb on - strand at 64.808 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3 remove 59,777 - GFF2981 0.74 -1.1 60,155 - -2.5 60,155 - +0.1 60,214 + +1.1 60,215 - -1.5 60,423 + +0.1 60,423 + -1.9 60,423 + +0.1 60,423 + -0.5 60,424 - -1.3 60,424 - -0.0 60,447 + -0.1 60,448 - +1.1 60,702 + GFF2982 0.10 +1.1 60,840 + GFF2982 0.14 -0.1 60,841 - GFF2982 0.14 +0.6 60,903 + GFF2982 0.16 +0.8 60,903 + GFF2982 0.16 -0.2 60,924 + GFF2982 0.16 +0.0 60,924 + GFF2982 0.16 +0.1 60,925 - GFF2982 0.16 +1.7 60,925 - GFF2982 0.16 -0.3 61,167 + GFF2982 0.23 -0.5 61,168 - GFF2982 0.23 +0.8 61,168 - GFF2982 0.23 -0.0 61,168 - GFF2982 0.23 -0.7 61,168 - GFF2982 0.23 -0.9 61,182 + GFF2982 0.24 -1.3 61,263 + GFF2982 0.26 -0.3 61,263 + GFF2982 0.26 +0.1 61,264 - GFF2982 0.26 -0.1 61,443 + GFF2982 0.31 +0.5 61,444 - GFF2982 0.31 +0.3 61,455 + GFF2982 0.31 -0.7 61,464 + GFF2982 0.32 +0.0 61,464 + GFF2982 0.32 +0.6 61,465 - GFF2982 0.32 +0.1 61,465 - GFF2982 0.32 +0.9 61,741 - GFF2982 0.39 -1.1 61,837 - GFF2982 0.42 -0.7 61,950 + GFF2982 0.45 +1.3 61,950 + GFF2982 0.45 -0.3 61,951 - GFF2982 0.45 +1.0 61,951 - GFF2982 0.45 -0.2 61,951 - GFF2982 0.45 +0.3 61,951 - GFF2982 0.45 -0.2 61,954 - GFF2982 0.45 +0.7 61,954 - GFF2982 0.45 -0.3 61,954 - GFF2982 0.45 -0.2 62,023 - GFF2982 0.47 -0.5 62,023 - GFF2982 0.47 -0.5 62,035 - GFF2982 0.48 +0.3 62,035 - GFF2982 0.48 -0.8 63,327 + GFF2982 0.84 -0.9 63,328 - GFF2982 0.84 +0.0 63,456 + GFF2982 0.88 +0.6 63,457 - GFF2982 0.88 +0.3 63,457 - GFF2982 0.88 -0.0 63,468 + GFF2982 0.88 -1.0 63,468 + GFF2982 0.88 -0.1 63,469 - GFF2982 0.88 +1.1 63,549 + +0.9 63,549 + +0.2 63,550 - +0.1 63,550 - -1.4 63,550 - -0.1 63,727 - -0.1 64,347 + GFF2983 0.43 +1.9 64,348 - GFF2983 0.43 +0.6 64,348 - GFF2983 0.43 +0.1 64,348 - GFF2983 0.43 +1.4 64,372 - GFF2983 0.46 +1.7 64,419 - GFF2983 0.52 -0.7 64,808 - +1.8 64,808 - -0.5
Or see this region's nucleotide sequence