Experiment: Ying_all64 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2883 and GFF2884 are separated by 13 nucleotides GFF2884 and GFF2885 are separated by 41 nucleotides GFF2885 and GFF2886 are separated by 113 nucleotides GFF2886 and GFF2887 are separated by 3 nucleotides
GFF2883 - Urea ABC transporter, ATPase protein UrtD, at 474,071 to 474,814
GFF2883
GFF2884 - Urea ABC transporter, ATPase protein UrtE, at 474,828 to 475,517
GFF2884
GFF2885 - Formamidase (EC 3.5.1.49), at 475,559 to 476,785
GFF2885
GFF2886 - regulatory protein, putative, at 476,899 to 477,240
GFF2886
GFF2887 - hypothetical protein, at 477,244 to 477,711
GFF2887
Position (kb) 475
476
477 Strain fitness (log2 ratio) -2
-1
0
1 at 474.859 kb on - strand at 475.065 kb on + strand, within GFF2884 at 475.066 kb on - strand, within GFF2884 at 475.167 kb on + strand, within GFF2884 at 475.504 kb on - strand at 475.770 kb on - strand, within GFF2885 at 475.770 kb on - strand, within GFF2885 at 475.994 kb on + strand, within GFF2885 at 476.274 kb on - strand, within GFF2885 at 476.459 kb on + strand, within GFF2885 at 476.469 kb on - strand, within GFF2885 at 476.513 kb on + strand, within GFF2885 at 476.516 kb on + strand, within GFF2885 at 476.517 kb on - strand, within GFF2885 at 477.738 kb on + strand at 477.738 kb on + strand at 477.738 kb on + strand at 477.752 kb on + strand at 477.752 kb on + strand at 477.752 kb on + strand at 477.752 kb on + strand at 477.753 kb on - strand at 477.754 kb on + strand at 477.754 kb on + strand at 477.755 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3 remove 474,859 - +0.4 475,065 + GFF2884 0.34 -1.5 475,066 - GFF2884 0.34 -0.4 475,167 + GFF2884 0.49 +0.5 475,504 - -0.1 475,770 - GFF2885 0.17 -0.3 475,770 - GFF2885 0.17 +1.2 475,994 + GFF2885 0.35 +0.4 476,274 - GFF2885 0.58 +0.7 476,459 + GFF2885 0.73 -1.1 476,469 - GFF2885 0.74 -0.4 476,513 + GFF2885 0.78 +1.0 476,516 + GFF2885 0.78 +0.2 476,517 - GFF2885 0.78 -0.9 477,738 + -1.0 477,738 + +0.5 477,738 + +0.7 477,752 + -0.8 477,752 + -1.3 477,752 + +0.5 477,752 + -0.7 477,753 - -0.5 477,754 + +0.1 477,754 + -0.1 477,755 - -2.0
Or see this region's nucleotide sequence