Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2875

Experiment: Ying_all64 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2873 and GFF2874 are separated by 1 nucleotidesGFF2874 and GFF2875 are separated by 2 nucleotidesGFF2875 and GFF2876 are separated by 100 nucleotides GFF2873 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 461,355 to 462,116 GFF2873 GFF2874 - Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1), at 462,118 to 462,873 GFF2874 GFF2875 - Transcriptional regulator, LysR family, at 462,876 to 463,769 GFF2875 GFF2876 - Putative drug efflux protein, at 463,870 to 465,081 GFF2876 Position (kb) 462 463 464Strain fitness (log2 ratio) -2 -1 0 1at 462.173 kb on - strandat 462.173 kb on - strandat 462.953 kb on - strandat 462.955 kb on + strandat 463.255 kb on + strand, within GFF2875at 463.256 kb on - strand, within GFF2875at 464.009 kb on - strand, within GFF2876at 464.533 kb on + strand, within GFF2876at 464.534 kb on - strand, within GFF2876at 464.611 kb on + strand, within GFF2876

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3
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462,173 - -0.2
462,173 - -0.1
462,953 - -0.1
462,955 + -0.4
463,255 + GFF2875 0.42 -0.2
463,256 - GFF2875 0.43 +1.3
464,009 - GFF2876 0.11 -0.0
464,533 + GFF2876 0.55 -0.3
464,534 - GFF2876 0.55 +1.0
464,611 + GFF2876 0.61 -1.8

Or see this region's nucleotide sequence