Experiment: Ying_all64 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2866 and GFF2867 overlap by 7 nucleotides GFF2867 and GFF2868 are separated by 137 nucleotides GFF2868 and GFF2869 are separated by 13 nucleotides GFF2869 and GFF2870 are separated by 232 nucleotides
GFF2866 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 454,180 to 455,700
GFF2866
GFF2867 - hypothetical protein, at 455,694 to 456,098
GFF2867
GFF2868 - Glyoxylate reductase (EC 1.1.1.79) / Glyoxylate reductase (EC 1.1.1.26) / Hydroxypyruvate reductase (EC 1.1.1.81); 2-ketoaldonate reductase, broad specificity (EC 1.1.1.215) (EC 1.1.1.-), at 456,236 to 457,279
GFF2868
GFF2869 - Transcriptional regulator, IclR family, at 457,293 to 458,045
GFF2869
GFF2870 - Branched-chain amino acid ABC transporter, amino acid-binding protein (TC 3.A.1.4.1), at 458,278 to 459,432
GFF2870
Position (kb) 456
457
458 Strain fitness (log2 ratio) -2
-1
0
1 at 455.421 kb on - strand, within GFF2866 at 455.421 kb on - strand, within GFF2866 at 455.424 kb on - strand, within GFF2866 at 455.424 kb on - strand, within GFF2866 at 455.505 kb on - strand, within GFF2866 at 455.505 kb on - strand, within GFF2866 at 455.801 kb on - strand, within GFF2867 at 455.801 kb on - strand, within GFF2867 at 456.285 kb on + strand at 456.836 kb on + strand, within GFF2868 at 456.837 kb on - strand, within GFF2868 at 456.837 kb on - strand, within GFF2868 at 457.450 kb on + strand, within GFF2869 at 457.666 kb on + strand, within GFF2869 at 457.708 kb on + strand, within GFF2869 at 457.708 kb on + strand, within GFF2869 at 457.708 kb on + strand, within GFF2869 at 457.708 kb on + strand, within GFF2869 at 457.709 kb on - strand, within GFF2869 at 457.709 kb on - strand, within GFF2869 at 457.741 kb on + strand, within GFF2869 at 457.742 kb on - strand, within GFF2869 at 458.062 kb on + strand at 458.062 kb on + strand at 458.062 kb on + strand at 458.062 kb on + strand at 458.063 kb on - strand at 458.063 kb on - strand at 458.189 kb on - strand at 458.189 kb on - strand at 458.262 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3 remove 455,421 - GFF2866 0.82 -0.2 455,421 - GFF2866 0.82 +0.5 455,424 - GFF2866 0.82 +0.5 455,424 - GFF2866 0.82 +0.1 455,505 - GFF2866 0.87 -0.5 455,505 - GFF2866 0.87 -0.0 455,801 - GFF2867 0.26 -0.1 455,801 - GFF2867 0.26 -0.5 456,285 + +0.3 456,836 + GFF2868 0.57 +0.2 456,837 - GFF2868 0.58 +0.5 456,837 - GFF2868 0.58 +0.6 457,450 + GFF2869 0.21 -0.5 457,666 + GFF2869 0.50 +0.2 457,708 + GFF2869 0.55 -0.1 457,708 + GFF2869 0.55 -1.3 457,708 + GFF2869 0.55 +0.4 457,708 + GFF2869 0.55 +0.9 457,709 - GFF2869 0.55 +0.6 457,709 - GFF2869 0.55 -0.5 457,741 + GFF2869 0.59 -0.1 457,742 - GFF2869 0.60 -0.0 458,062 + -2.1 458,062 + -0.3 458,062 + +0.1 458,062 + +0.4 458,063 - +0.5 458,063 - -0.9 458,189 - -0.7 458,189 - -0.3 458,262 + -0.5
Or see this region's nucleotide sequence