Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2838

Experiment: Ying_all64 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2837 and GFF2838 are separated by 45 nucleotidesGFF2838 and GFF2839 are separated by 6 nucleotidesGFF2839 and GFF2840 are separated by 12 nucleotides GFF2837 - Rieske (2Fe-2S) region, at 429,115 to 430,389 GFF2837 GFF2838 - putative exported protein, at 430,435 to 431,412 GFF2838 GFF2839 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 431,419 to 432,210 GFF2839 GFF2840 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-), at 432,223 to 433,194 GFF2840 Position (kb) 430 431 432Strain fitness (log2 ratio) -2 -1 0 1 2 3at 429.469 kb on + strand, within GFF2837at 429.470 kb on - strand, within GFF2837at 429.505 kb on + strand, within GFF2837at 429.505 kb on + strand, within GFF2837at 429.505 kb on + strand, within GFF2837at 429.505 kb on + strand, within GFF2837at 429.505 kb on + strand, within GFF2837at 429.506 kb on - strand, within GFF2837at 429.506 kb on - strand, within GFF2837at 429.506 kb on - strand, within GFF2837at 429.506 kb on - strand, within GFF2837at 429.506 kb on - strand, within GFF2837at 429.599 kb on - strand, within GFF2837at 429.599 kb on - strand, within GFF2837at 429.599 kb on - strand, within GFF2837at 429.652 kb on + strand, within GFF2837at 429.652 kb on + strand, within GFF2837at 429.652 kb on + strand, within GFF2837at 429.652 kb on + strand, within GFF2837at 429.652 kb on + strand, within GFF2837at 429.652 kb on + strand, within GFF2837at 429.653 kb on - strand, within GFF2837at 429.653 kb on - strand, within GFF2837at 429.653 kb on - strand, within GFF2837at 429.653 kb on - strand, within GFF2837at 429.653 kb on - strand, within GFF2837at 429.653 kb on - strand, within GFF2837at 429.713 kb on - strand, within GFF2837at 429.713 kb on - strand, within GFF2837at 429.713 kb on - strand, within GFF2837at 429.713 kb on - strand, within GFF2837at 429.713 kb on - strand, within GFF2837at 429.713 kb on - strand, within GFF2837at 429.713 kb on - strand, within GFF2837at 429.805 kb on + strand, within GFF2837at 429.805 kb on + strand, within GFF2837at 429.806 kb on - strand, within GFF2837at 429.806 kb on - strand, within GFF2837at 429.808 kb on + strand, within GFF2837at 429.808 kb on + strand, within GFF2837at 429.808 kb on + strand, within GFF2837at 429.809 kb on - strand, within GFF2837at 430.006 kb on + strand, within GFF2837at 430.007 kb on - strand, within GFF2837at 430.055 kb on - strand, within GFF2837at 430.093 kb on + strand, within GFF2837at 430.094 kb on - strand, within GFF2837at 430.094 kb on - strand, within GFF2837at 430.094 kb on - strand, within GFF2837at 430.094 kb on - strand, within GFF2837at 430.094 kb on - strand, within GFF2837at 430.094 kb on - strand, within GFF2837at 430.094 kb on - strand, within GFF2837at 430.126 kb on + strand, within GFF2837at 430.126 kb on + strand, within GFF2837at 430.127 kb on - strand, within GFF2837at 430.127 kb on - strand, within GFF2837at 430.127 kb on - strand, within GFF2837at 430.718 kb on - strand, within GFF2838at 430.718 kb on - strand, within GFF2838at 430.765 kb on + strand, within GFF2838at 430.765 kb on + strand, within GFF2838at 430.766 kb on - strand, within GFF2838at 430.819 kb on + strand, within GFF2838at 430.819 kb on + strand, within GFF2838at 430.897 kb on + strand, within GFF2838at 430.897 kb on + strand, within GFF2838at 430.898 kb on - strand, within GFF2838at 430.898 kb on - strand, within GFF2838at 430.898 kb on - strand, within GFF2838at 430.904 kb on - strand, within GFF2838at 431.728 kb on + strand, within GFF2839at 431.728 kb on + strand, within GFF2839at 431.728 kb on + strand, within GFF2839at 431.728 kb on + strand, within GFF2839at 431.728 kb on + strand, within GFF2839at 431.729 kb on - strand, within GFF2839at 431.729 kb on - strand, within GFF2839at 431.729 kb on - strand, within GFF2839at 431.729 kb on - strand, within GFF2839at 431.803 kb on + strand, within GFF2839at 431.803 kb on + strand, within GFF2839at 431.872 kb on + strand, within GFF2839at 431.872 kb on + strand, within GFF2839at 431.873 kb on - strand, within GFF2839at 431.873 kb on - strand, within GFF2839at 431.905 kb on + strand, within GFF2839at 431.906 kb on - strand, within GFF2839at 431.906 kb on - strand, within GFF2839at 432.385 kb on + strand, within GFF2840

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3
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429,469 + GFF2837 0.28 -0.1
429,470 - GFF2837 0.28 +0.3
429,505 + GFF2837 0.31 -0.0
429,505 + GFF2837 0.31 -0.2
429,505 + GFF2837 0.31 +1.0
429,505 + GFF2837 0.31 +2.4
429,505 + GFF2837 0.31 -0.2
429,506 - GFF2837 0.31 -2.1
429,506 - GFF2837 0.31 +0.0
429,506 - GFF2837 0.31 +1.0
429,506 - GFF2837 0.31 +1.8
429,506 - GFF2837 0.31 +0.2
429,599 - GFF2837 0.38 -0.3
429,599 - GFF2837 0.38 -0.4
429,599 - GFF2837 0.38 +0.4
429,652 + GFF2837 0.42 +0.9
429,652 + GFF2837 0.42 +0.0
429,652 + GFF2837 0.42 +0.6
429,652 + GFF2837 0.42 -0.4
429,652 + GFF2837 0.42 +0.3
429,652 + GFF2837 0.42 -0.5
429,653 - GFF2837 0.42 -0.5
429,653 - GFF2837 0.42 +0.0
429,653 - GFF2837 0.42 +0.2
429,653 - GFF2837 0.42 -0.8
429,653 - GFF2837 0.42 +0.1
429,653 - GFF2837 0.42 +0.0
429,713 - GFF2837 0.47 +0.2
429,713 - GFF2837 0.47 +0.1
429,713 - GFF2837 0.47 +0.0
429,713 - GFF2837 0.47 +0.3
429,713 - GFF2837 0.47 -1.1
429,713 - GFF2837 0.47 -0.4
429,713 - GFF2837 0.47 -0.1
429,805 + GFF2837 0.54 +1.0
429,805 + GFF2837 0.54 -0.3
429,806 - GFF2837 0.54 +1.6
429,806 - GFF2837 0.54 +0.3
429,808 + GFF2837 0.54 -0.4
429,808 + GFF2837 0.54 -0.3
429,808 + GFF2837 0.54 -1.3
429,809 - GFF2837 0.54 -0.6
430,006 + GFF2837 0.70 -1.0
430,007 - GFF2837 0.70 -0.4
430,055 - GFF2837 0.74 +0.2
430,093 + GFF2837 0.77 -0.1
430,094 - GFF2837 0.77 -0.0
430,094 - GFF2837 0.77 +3.0
430,094 - GFF2837 0.77 -0.2
430,094 - GFF2837 0.77 -0.2
430,094 - GFF2837 0.77 -0.1
430,094 - GFF2837 0.77 -0.5
430,094 - GFF2837 0.77 -1.3
430,126 + GFF2837 0.79 +0.2
430,126 + GFF2837 0.79 -0.7
430,127 - GFF2837 0.79 +0.3
430,127 - GFF2837 0.79 +0.0
430,127 - GFF2837 0.79 +0.1
430,718 - GFF2838 0.29 +1.5
430,718 - GFF2838 0.29 +0.5
430,765 + GFF2838 0.34 +1.5
430,765 + GFF2838 0.34 -0.5
430,766 - GFF2838 0.34 +2.6
430,819 + GFF2838 0.39 +0.3
430,819 + GFF2838 0.39 +0.6
430,897 + GFF2838 0.47 -0.0
430,897 + GFF2838 0.47 -0.3
430,898 - GFF2838 0.47 +0.5
430,898 - GFF2838 0.47 +0.4
430,898 - GFF2838 0.47 +0.0
430,904 - GFF2838 0.48 +0.7
431,728 + GFF2839 0.39 -0.6
431,728 + GFF2839 0.39 -0.3
431,728 + GFF2839 0.39 -0.5
431,728 + GFF2839 0.39 +1.0
431,728 + GFF2839 0.39 -0.4
431,729 - GFF2839 0.39 -1.0
431,729 - GFF2839 0.39 +0.8
431,729 - GFF2839 0.39 +0.5
431,729 - GFF2839 0.39 +0.6
431,803 + GFF2839 0.48 +0.1
431,803 + GFF2839 0.48 +1.0
431,872 + GFF2839 0.57 +0.5
431,872 + GFF2839 0.57 -0.1
431,873 - GFF2839 0.57 +0.3
431,873 - GFF2839 0.57 -0.1
431,905 + GFF2839 0.61 -0.3
431,906 - GFF2839 0.61 +0.3
431,906 - GFF2839 0.61 +0.0
432,385 + GFF2840 0.17 +0.1

Or see this region's nucleotide sequence