Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2795

Experiment: Ying_all64 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2793 and GFF2794 are separated by 127 nucleotidesGFF2794 and GFF2795 overlap by 4 nucleotidesGFF2795 and GFF2796 are separated by 28 nucleotides GFF2793 - Lysophospholipid transporter LplT / 2-acylglycerophosphoethanolamine acyltransferase (EC 2.3.1.40) / Acyl-[acyl-carrier-protein] synthetase (EC 6.2.1.20), at 389,992 to 391,947 GFF2793 GFF2794 - Conjugative transfer protein TrbL, at 392,075 to 392,275 GFF2794 GFF2795 - Putative outer membrane protein, at 392,272 to 393,072 GFF2795 GFF2796 - FIG00931903: hypothetical protein, at 393,101 to 394,144 GFF2796 Position (kb) 392 393 394Strain fitness (log2 ratio) -1 0 1 2at 391.294 kb on + strand, within GFF2793at 391.294 kb on + strand, within GFF2793at 391.295 kb on - strand, within GFF2793at 391.295 kb on - strand, within GFF2793at 391.295 kb on - strand, within GFF2793at 391.585 kb on + strand, within GFF2793at 392.152 kb on + strand, within GFF2794at 392.152 kb on + strand, within GFF2794at 392.494 kb on + strand, within GFF2795at 392.495 kb on - strand, within GFF2795at 392.495 kb on - strand, within GFF2795at 392.495 kb on - strand, within GFF2795at 392.495 kb on - strand, within GFF2795at 392.495 kb on - strand, within GFF2795at 392.507 kb on - strand, within GFF2795at 392.527 kb on + strand, within GFF2795at 392.527 kb on + strand, within GFF2795at 392.528 kb on - strand, within GFF2795at 392.528 kb on - strand, within GFF2795at 392.599 kb on + strand, within GFF2795at 392.599 kb on + strand, within GFF2795at 392.599 kb on + strand, within GFF2795at 392.743 kb on + strand, within GFF2795at 392.744 kb on - strand, within GFF2795at 392.758 kb on + strand, within GFF2795at 392.758 kb on + strand, within GFF2795at 392.758 kb on + strand, within GFF2795at 392.758 kb on + strand, within GFF2795at 392.758 kb on + strand, within GFF2795at 392.758 kb on + strand, within GFF2795at 392.759 kb on - strand, within GFF2795at 392.759 kb on - strand, within GFF2795at 392.759 kb on - strand, within GFF2795at 392.759 kb on - strand, within GFF2795at 392.759 kb on - strand, within GFF2795at 392.759 kb on - strand, within GFF2795at 392.759 kb on - strand, within GFF2795at 392.759 kb on - strand, within GFF2795at 392.759 kb on - strand, within GFF2795at 392.759 kb on - strand, within GFF2795at 392.759 kb on - strand, within GFF2795at 392.759 kb on - strand, within GFF2795at 392.759 kb on - strand, within GFF2795at 392.776 kb on + strand, within GFF2795at 392.878 kb on + strand, within GFF2795at 393.608 kb on + strand, within GFF2796at 393.722 kb on + strand, within GFF2796at 393.722 kb on + strand, within GFF2796at 393.723 kb on - strand, within GFF2796at 393.723 kb on - strand, within GFF2796at 393.723 kb on - strand, within GFF2796at 393.800 kb on + strand, within GFF2796at 393.800 kb on + strand, within GFF2796at 393.801 kb on - strand, within GFF2796at 393.801 kb on - strand, within GFF2796at 393.801 kb on - strand, within GFF2796at 393.810 kb on - strand, within GFF2796at 393.810 kb on - strand, within GFF2796at 393.810 kb on - strand, within GFF2796at 393.818 kb on + strand, within GFF2796at 393.818 kb on + strand, within GFF2796at 393.819 kb on - strand, within GFF2796at 393.819 kb on - strand, within GFF2796at 393.881 kb on + strand, within GFF2796at 393.882 kb on - strand, within GFF2796at 393.882 kb on - strand, within GFF2796at 393.944 kb on + strand, within GFF2796at 393.944 kb on + strand, within GFF2796at 393.944 kb on + strand, within GFF2796at 393.945 kb on - strand, within GFF2796

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3
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391,294 + GFF2793 0.67 +0.1
391,294 + GFF2793 0.67 +0.5
391,295 - GFF2793 0.67 -0.3
391,295 - GFF2793 0.67 -0.4
391,295 - GFF2793 0.67 +0.2
391,585 + GFF2793 0.81 +0.0
392,152 + GFF2794 0.38 +0.6
392,152 + GFF2794 0.38 +0.7
392,494 + GFF2795 0.28 -0.1
392,495 - GFF2795 0.28 -1.5
392,495 - GFF2795 0.28 +0.6
392,495 - GFF2795 0.28 +0.3
392,495 - GFF2795 0.28 +0.2
392,495 - GFF2795 0.28 +0.3
392,507 - GFF2795 0.29 -0.2
392,527 + GFF2795 0.32 -0.2
392,527 + GFF2795 0.32 +0.1
392,528 - GFF2795 0.32 -0.2
392,528 - GFF2795 0.32 +0.8
392,599 + GFF2795 0.41 +1.0
392,599 + GFF2795 0.41 -0.1
392,599 + GFF2795 0.41 +0.0
392,743 + GFF2795 0.59 -0.3
392,744 - GFF2795 0.59 +0.1
392,758 + GFF2795 0.61 -0.3
392,758 + GFF2795 0.61 +2.0
392,758 + GFF2795 0.61 +0.2
392,758 + GFF2795 0.61 -0.2
392,758 + GFF2795 0.61 +0.7
392,758 + GFF2795 0.61 +0.2
392,759 - GFF2795 0.61 -0.6
392,759 - GFF2795 0.61 -0.5
392,759 - GFF2795 0.61 +1.0
392,759 - GFF2795 0.61 +0.9
392,759 - GFF2795 0.61 -0.5
392,759 - GFF2795 0.61 -1.0
392,759 - GFF2795 0.61 -0.0
392,759 - GFF2795 0.61 +0.6
392,759 - GFF2795 0.61 +0.1
392,759 - GFF2795 0.61 +0.2
392,759 - GFF2795 0.61 +0.9
392,759 - GFF2795 0.61 +1.2
392,759 - GFF2795 0.61 -0.1
392,776 + GFF2795 0.63 +0.4
392,878 + GFF2795 0.76 +0.2
393,608 + GFF2796 0.49 -0.8
393,722 + GFF2796 0.59 -1.1
393,722 + GFF2796 0.59 -0.7
393,723 - GFF2796 0.60 +0.0
393,723 - GFF2796 0.60 -0.2
393,723 - GFF2796 0.60 +0.4
393,800 + GFF2796 0.67 -0.1
393,800 + GFF2796 0.67 +0.1
393,801 - GFF2796 0.67 +0.3
393,801 - GFF2796 0.67 -0.2
393,801 - GFF2796 0.67 -0.1
393,810 - GFF2796 0.68 +1.0
393,810 - GFF2796 0.68 -0.1
393,810 - GFF2796 0.68 -1.1
393,818 + GFF2796 0.69 -1.0
393,818 + GFF2796 0.69 +0.2
393,819 - GFF2796 0.69 -0.1
393,819 - GFF2796 0.69 +1.5
393,881 + GFF2796 0.75 +0.5
393,882 - GFF2796 0.75 +1.0
393,882 - GFF2796 0.75 +0.5
393,944 + GFF2796 0.81 -0.3
393,944 + GFF2796 0.81 -0.2
393,944 + GFF2796 0.81 +0.4
393,945 - GFF2796 0.81 +1.3

Or see this region's nucleotide sequence