Experiment: Ying_all64 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF278 and GFF279 are separated by 35 nucleotides GFF279 and GFF280 are separated by 258 nucleotides
GFF278 - Alpha/beta hydrolase fold, at 292,658 to 293,575
GFF278
GFF279 - Acetyl-coenzyme A synthetase (EC 6.2.1.1), at 293,611 to 295,356
GFF279
GFF280 - Transcriptional regulators, LysR family, at 295,615 to 296,550
GFF280
Position (kb) 293
294
295
296 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 292.618 kb on + strand at 292.619 kb on - strand at 292.619 kb on - strand at 292.619 kb on - strand at 292.619 kb on - strand at 292.619 kb on - strand at 292.619 kb on - strand at 292.654 kb on + strand at 292.654 kb on + strand at 292.655 kb on - strand at 292.655 kb on - strand at 292.655 kb on - strand at 292.655 kb on - strand at 292.878 kb on + strand, within GFF278 at 292.879 kb on - strand, within GFF278 at 292.906 kb on - strand, within GFF278 at 293.067 kb on + strand, within GFF278 at 293.067 kb on + strand, within GFF278 at 293.220 kb on + strand, within GFF278 at 293.220 kb on + strand, within GFF278 at 293.221 kb on + strand, within GFF278 at 293.221 kb on - strand, within GFF278 at 293.221 kb on - strand, within GFF278 at 293.221 kb on - strand, within GFF278 at 293.221 kb on - strand, within GFF278 at 293.221 kb on - strand, within GFF278 at 293.221 kb on - strand, within GFF278 at 293.331 kb on + strand, within GFF278 at 293.331 kb on + strand, within GFF278 at 293.331 kb on + strand, within GFF278 at 293.331 kb on + strand, within GFF278 at 293.332 kb on - strand, within GFF278 at 293.332 kb on - strand, within GFF278 at 293.332 kb on - strand, within GFF278 at 293.332 kb on - strand, within GFF278 at 293.332 kb on - strand, within GFF278 at 293.517 kb on + strand at 293.517 kb on + strand at 293.571 kb on + strand at 293.571 kb on + strand at 293.571 kb on + strand at 293.571 kb on + strand at 293.572 kb on - strand at 293.662 kb on + strand at 293.662 kb on + strand at 293.663 kb on - strand at 293.663 kb on - strand at 293.815 kb on + strand, within GFF279 at 293.815 kb on + strand, within GFF279 at 293.816 kb on - strand, within GFF279 at 293.816 kb on - strand, within GFF279 at 293.932 kb on + strand, within GFF279 at 293.932 kb on + strand, within GFF279 at 293.933 kb on - strand, within GFF279 at 293.933 kb on - strand, within GFF279 at 293.933 kb on - strand, within GFF279 at 294.208 kb on + strand, within GFF279 at 294.209 kb on - strand, within GFF279 at 294.209 kb on - strand, within GFF279 at 294.209 kb on - strand, within GFF279 at 294.235 kb on + strand, within GFF279 at 294.235 kb on + strand, within GFF279 at 294.236 kb on - strand, within GFF279 at 294.464 kb on - strand, within GFF279 at 294.712 kb on + strand, within GFF279 at 294.712 kb on + strand, within GFF279 at 294.712 kb on + strand, within GFF279 at 294.712 kb on + strand, within GFF279 at 294.713 kb on - strand, within GFF279 at 294.713 kb on - strand, within GFF279 at 294.713 kb on - strand, within GFF279 at 294.772 kb on + strand, within GFF279 at 294.773 kb on - strand, within GFF279 at 294.932 kb on - strand, within GFF279 at 294.997 kb on + strand, within GFF279 at 295.241 kb on - strand at 295.617 kb on - strand at 295.617 kb on - strand at 296.210 kb on + strand, within GFF280 at 296.211 kb on - strand, within GFF280 at 296.211 kb on - strand, within GFF280 at 296.211 kb on - strand, within GFF280 at 296.213 kb on + strand, within GFF280 at 296.213 kb on + strand, within GFF280 at 296.214 kb on - strand, within GFF280
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3 remove 292,618 + +0.2 292,619 - -0.4 292,619 - -0.3 292,619 - +0.1 292,619 - +0.5 292,619 - +0.3 292,619 - +0.1 292,654 + -0.1 292,654 + -0.4 292,655 - -0.3 292,655 - +0.2 292,655 - -1.5 292,655 - +0.4 292,878 + GFF278 0.24 -0.8 292,879 - GFF278 0.24 -1.6 292,906 - GFF278 0.27 -1.3 293,067 + GFF278 0.45 -0.7 293,067 + GFF278 0.45 -0.0 293,220 + GFF278 0.61 -0.1 293,220 + GFF278 0.61 -0.0 293,221 + GFF278 0.61 +0.6 293,221 - GFF278 0.61 -0.3 293,221 - GFF278 0.61 +0.3 293,221 - GFF278 0.61 -0.5 293,221 - GFF278 0.61 -1.0 293,221 - GFF278 0.61 +0.1 293,221 - GFF278 0.61 +1.2 293,331 + GFF278 0.73 -0.0 293,331 + GFF278 0.73 +0.4 293,331 + GFF278 0.73 +0.5 293,331 + GFF278 0.73 -0.0 293,332 - GFF278 0.73 +0.1 293,332 - GFF278 0.73 +0.1 293,332 - GFF278 0.73 +0.2 293,332 - GFF278 0.73 -0.6 293,332 - GFF278 0.73 +0.5 293,517 + +0.8 293,517 + +1.7 293,571 + -0.4 293,571 + +1.6 293,571 + -1.5 293,571 + -0.6 293,572 - -0.2 293,662 + -0.1 293,662 + -0.4 293,663 - +0.4 293,663 - +0.5 293,815 + GFF279 0.12 +0.4 293,815 + GFF279 0.12 -0.0 293,816 - GFF279 0.12 +0.3 293,816 - GFF279 0.12 -1.2 293,932 + GFF279 0.18 -0.7 293,932 + GFF279 0.18 -0.0 293,933 - GFF279 0.18 -0.1 293,933 - GFF279 0.18 +0.4 293,933 - GFF279 0.18 -0.3 294,208 + GFF279 0.34 +0.2 294,209 - GFF279 0.34 +0.1 294,209 - GFF279 0.34 +1.0 294,209 - GFF279 0.34 -0.1 294,235 + GFF279 0.36 +0.2 294,235 + GFF279 0.36 -0.7 294,236 - GFF279 0.36 +0.2 294,464 - GFF279 0.49 -0.6 294,712 + GFF279 0.63 +0.8 294,712 + GFF279 0.63 +0.6 294,712 + GFF279 0.63 -0.5 294,712 + GFF279 0.63 +4.3 294,713 - GFF279 0.63 +0.4 294,713 - GFF279 0.63 -1.2 294,713 - GFF279 0.63 +0.3 294,772 + GFF279 0.66 -0.4 294,773 - GFF279 0.67 -0.0 294,932 - GFF279 0.76 -0.2 294,997 + GFF279 0.79 +0.3 295,241 - +0.1 295,617 - +0.2 295,617 - -0.0 296,210 + GFF280 0.64 +0.7 296,211 - GFF280 0.64 -0.2 296,211 - GFF280 0.64 +0.5 296,211 - GFF280 0.64 -0.3 296,213 + GFF280 0.64 +0.1 296,213 + GFF280 0.64 +0.5 296,214 - GFF280 0.64 +0.2
Or see this region's nucleotide sequence