Experiment: Ying_all64 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF274 and GFF275 are separated by 14 nucleotides GFF275 and GFF276 are separated by 3 nucleotides
GFF274 - Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11), at 287,132 to 288,139
GFF274
GFF275 - Membrane alanine aminopeptidase N (EC 3.4.11.2), at 288,154 to 290,862
GFF275
GFF276 - Peptide chain release factor 2; programmed frameshift-containing, at 290,866 to 291,765
GFF276
Position (kb) 288
289
290
291 Strain fitness (log2 ratio) -2
-1
0
1
2 at 288.175 kb on + strand at 288.176 kb on - strand at 288.176 kb on - strand at 288.178 kb on + strand at 288.178 kb on + strand at 288.179 kb on - strand at 288.179 kb on - strand at 288.179 kb on - strand at 288.179 kb on - strand at 288.356 kb on + strand at 288.357 kb on - strand at 288.357 kb on - strand at 288.404 kb on + strand at 288.405 kb on - strand at 288.405 kb on - strand at 288.405 kb on - strand at 288.405 kb on - strand at 288.674 kb on + strand, within GFF275 at 288.675 kb on - strand, within GFF275 at 288.920 kb on + strand, within GFF275 at 288.920 kb on + strand, within GFF275 at 288.920 kb on + strand, within GFF275 at 288.920 kb on + strand, within GFF275 at 288.920 kb on + strand, within GFF275 at 288.920 kb on + strand, within GFF275 at 289.154 kb on + strand, within GFF275 at 289.154 kb on + strand, within GFF275 at 289.155 kb on - strand, within GFF275 at 289.422 kb on - strand, within GFF275 at 289.422 kb on - strand, within GFF275 at 289.443 kb on - strand, within GFF275 at 289.443 kb on - strand, within GFF275 at 289.484 kb on + strand, within GFF275 at 289.485 kb on - strand, within GFF275 at 289.485 kb on - strand, within GFF275 at 289.598 kb on + strand, within GFF275 at 289.598 kb on + strand, within GFF275 at 289.599 kb on - strand, within GFF275 at 289.676 kb on + strand, within GFF275 at 289.677 kb on - strand, within GFF275 at 289.691 kb on + strand, within GFF275 at 289.713 kb on - strand, within GFF275 at 290.006 kb on + strand, within GFF275 at 290.006 kb on + strand, within GFF275 at 290.006 kb on + strand, within GFF275 at 290.006 kb on + strand, within GFF275 at 290.007 kb on - strand, within GFF275 at 290.007 kb on - strand, within GFF275 at 290.189 kb on + strand, within GFF275 at 290.189 kb on + strand, within GFF275 at 290.190 kb on - strand, within GFF275 at 290.190 kb on - strand, within GFF275 at 290.190 kb on - strand, within GFF275 at 290.190 kb on - strand, within GFF275 at 290.276 kb on + strand, within GFF275 at 290.276 kb on + strand, within GFF275 at 290.276 kb on + strand, within GFF275 at 290.276 kb on + strand, within GFF275 at 290.277 kb on - strand, within GFF275 at 290.277 kb on - strand, within GFF275 at 290.277 kb on - strand, within GFF275 at 290.388 kb on - strand, within GFF275 at 290.420 kb on + strand, within GFF275 at 290.420 kb on + strand, within GFF275 at 290.421 kb on - strand, within GFF275 at 290.421 kb on - strand, within GFF275 at 290.421 kb on - strand, within GFF275 at 290.453 kb on + strand, within GFF275 at 290.453 kb on + strand, within GFF275 at 290.453 kb on + strand, within GFF275 at 290.454 kb on - strand, within GFF275 at 290.454 kb on - strand, within GFF275 at 290.513 kb on + strand, within GFF275 at 290.798 kb on + strand at 290.798 kb on + strand at 290.798 kb on + strand at 290.813 kb on + strand at 290.814 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3 remove 288,175 + +0.8 288,176 - +0.1 288,176 - +0.4 288,178 + -0.2 288,178 + +0.2 288,179 - +2.0 288,179 - +0.0 288,179 - -0.1 288,179 - +0.0 288,356 + +0.1 288,357 - -1.3 288,357 - +1.3 288,404 + -0.7 288,405 - -0.9 288,405 - +0.5 288,405 - -1.1 288,405 - -0.0 288,674 + GFF275 0.19 -0.6 288,675 - GFF275 0.19 +0.3 288,920 + GFF275 0.28 +0.3 288,920 + GFF275 0.28 -0.0 288,920 + GFF275 0.28 +0.4 288,920 + GFF275 0.28 -0.3 288,920 + GFF275 0.28 -1.3 288,920 + GFF275 0.28 -0.4 289,154 + GFF275 0.37 -0.0 289,154 + GFF275 0.37 -0.3 289,155 - GFF275 0.37 -0.0 289,422 - GFF275 0.47 -2.6 289,422 - GFF275 0.47 +0.3 289,443 - GFF275 0.48 -1.7 289,443 - GFF275 0.48 -0.8 289,484 + GFF275 0.49 -0.1 289,485 - GFF275 0.49 -0.3 289,485 - GFF275 0.49 +1.6 289,598 + GFF275 0.53 -0.1 289,598 + GFF275 0.53 -0.6 289,599 - GFF275 0.53 -0.6 289,676 + GFF275 0.56 +1.0 289,677 - GFF275 0.56 -0.4 289,691 + GFF275 0.57 -1.5 289,713 - GFF275 0.58 +0.2 290,006 + GFF275 0.68 +0.4 290,006 + GFF275 0.68 +0.4 290,006 + GFF275 0.68 -0.0 290,006 + GFF275 0.68 -0.5 290,007 - GFF275 0.68 +0.1 290,007 - GFF275 0.68 -0.6 290,189 + GFF275 0.75 +0.3 290,189 + GFF275 0.75 -0.1 290,190 - GFF275 0.75 -1.1 290,190 - GFF275 0.75 -0.0 290,190 - GFF275 0.75 -0.0 290,190 - GFF275 0.75 +0.2 290,276 + GFF275 0.78 +1.0 290,276 + GFF275 0.78 +0.1 290,276 + GFF275 0.78 -0.6 290,276 + GFF275 0.78 -1.3 290,277 - GFF275 0.78 -0.2 290,277 - GFF275 0.78 -1.1 290,277 - GFF275 0.78 -0.4 290,388 - GFF275 0.82 -1.0 290,420 + GFF275 0.84 -0.0 290,420 + GFF275 0.84 +0.7 290,421 - GFF275 0.84 -0.8 290,421 - GFF275 0.84 +0.5 290,421 - GFF275 0.84 -0.1 290,453 + GFF275 0.85 +0.6 290,453 + GFF275 0.85 +0.4 290,453 + GFF275 0.85 -0.1 290,454 - GFF275 0.85 -0.8 290,454 - GFF275 0.85 -1.5 290,513 + GFF275 0.87 -0.4 290,798 + -0.6 290,798 + +0.1 290,798 + +0.1 290,813 + -1.1 290,814 - +0.7
Or see this region's nucleotide sequence