Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2731

Experiment: Ying_all64 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2730 and GFF2731 are separated by 24 nucleotidesGFF2731 and GFF2732 overlap by 4 nucleotides GFF2730 - Biotin carboxylase (EC 6.3.4.14), at 324,206 to 326,035 GFF2730 GFF2731 - Two-component system response regulator, at 326,060 to 326,545 GFF2731 GFF2732 - Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-), at 326,542 to 330,336 GFF2732 Position (kb) 326 327Strain fitness (log2 ratio) -2 -1 0 1 2at 325.238 kb on + strand, within GFF2730at 325.238 kb on + strand, within GFF2730at 325.238 kb on + strand, within GFF2730at 325.238 kb on + strand, within GFF2730at 325.238 kb on + strand, within GFF2730at 325.239 kb on - strand, within GFF2730at 325.239 kb on - strand, within GFF2730at 325.239 kb on - strand, within GFF2730at 325.331 kb on + strand, within GFF2730at 325.331 kb on + strand, within GFF2730at 325.331 kb on + strand, within GFF2730at 325.331 kb on + strand, within GFF2730at 325.332 kb on - strand, within GFF2730at 325.332 kb on - strand, within GFF2730at 325.886 kb on + strandat 325.886 kb on + strandat 325.886 kb on + strandat 325.887 kb on - strandat 325.887 kb on - strandat 326.199 kb on + strand, within GFF2731at 326.199 kb on + strand, within GFF2731at 326.200 kb on - strand, within GFF2731at 326.200 kb on - strand, within GFF2731at 326.409 kb on + strand, within GFF2731at 326.409 kb on + strand, within GFF2731at 326.410 kb on - strand, within GFF2731at 326.410 kb on - strand, within GFF2731at 326.410 kb on - strand, within GFF2731at 326.410 kb on - strand, within GFF2731at 326.410 kb on - strand, within GFF2731at 326.772 kb on - strandat 326.814 kb on + strandat 326.814 kb on + strandat 326.814 kb on + strandat 326.814 kb on + strandat 326.814 kb on + strandat 326.814 kb on + strandat 326.815 kb on - strandat 326.815 kb on - strandat 326.815 kb on - strandat 326.815 kb on - strandat 326.815 kb on - strandat 326.816 kb on + strandat 326.817 kb on - strandat 326.817 kb on - strandat 326.879 kb on + strandat 326.879 kb on + strandat 326.879 kb on + strandat 326.879 kb on + strandat 326.879 kb on + strandat 326.879 kb on + strandat 326.879 kb on + strandat 326.879 kb on + strandat 326.880 kb on - strandat 326.880 kb on - strandat 326.880 kb on - strandat 326.880 kb on - strandat 326.885 kb on + strandat 326.885 kb on + strandat 326.885 kb on + strandat 326.885 kb on + strandat 326.885 kb on + strandat 326.885 kb on + strandat 326.886 kb on - strandat 326.886 kb on - strandat 326.886 kb on - strandat 327.143 kb on + strand, within GFF2732at 327.143 kb on + strand, within GFF2732at 327.144 kb on - strand, within GFF2732at 327.248 kb on + strand, within GFF2732at 327.248 kb on + strand, within GFF2732at 327.249 kb on - strand, within GFF2732at 327.249 kb on - strand, within GFF2732at 327.328 kb on + strand, within GFF2732at 327.446 kb on + strand, within GFF2732at 327.447 kb on - strand, within GFF2732at 327.447 kb on - strand, within GFF2732at 327.447 kb on - strand, within GFF2732

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3
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325,238 + GFF2730 0.56 +0.3
325,238 + GFF2730 0.56 -0.5
325,238 + GFF2730 0.56 +0.2
325,238 + GFF2730 0.56 -0.5
325,238 + GFF2730 0.56 +0.1
325,239 - GFF2730 0.56 -0.3
325,239 - GFF2730 0.56 -0.3
325,239 - GFF2730 0.56 +0.8
325,331 + GFF2730 0.61 -0.1
325,331 + GFF2730 0.61 -0.1
325,331 + GFF2730 0.61 -1.2
325,331 + GFF2730 0.61 +0.4
325,332 - GFF2730 0.62 +0.1
325,332 - GFF2730 0.62 +0.1
325,886 + -1.7
325,886 + -0.5
325,886 + -0.3
325,887 - +0.9
325,887 - -1.3
326,199 + GFF2731 0.29 -1.3
326,199 + GFF2731 0.29 -1.1
326,200 - GFF2731 0.29 -1.5
326,200 - GFF2731 0.29 -0.8
326,409 + GFF2731 0.72 -0.5
326,409 + GFF2731 0.72 -0.5
326,410 - GFF2731 0.72 -0.2
326,410 - GFF2731 0.72 -1.8
326,410 - GFF2731 0.72 +0.4
326,410 - GFF2731 0.72 -1.4
326,410 - GFF2731 0.72 -0.4
326,772 - +1.8
326,814 + +0.6
326,814 + +0.7
326,814 + -0.3
326,814 + +0.4
326,814 + -0.0
326,814 + +0.4
326,815 - +0.1
326,815 - +0.5
326,815 - +0.2
326,815 - +0.5
326,815 - -0.4
326,816 + +0.3
326,817 - +0.1
326,817 - +0.0
326,879 + +0.8
326,879 + -0.3
326,879 + +0.1
326,879 + +1.0
326,879 + +0.3
326,879 + -0.2
326,879 + +0.2
326,879 + +0.8
326,880 - -1.0
326,880 - +0.7
326,880 - +0.4
326,880 - +1.0
326,885 + +0.0
326,885 + +0.9
326,885 + +0.6
326,885 + -0.6
326,885 + +0.3
326,885 + +0.2
326,886 - -0.3
326,886 - +0.7
326,886 - +0.1
327,143 + GFF2732 0.16 +0.0
327,143 + GFF2732 0.16 -0.3
327,144 - GFF2732 0.16 +0.0
327,248 + GFF2732 0.19 -0.7
327,248 + GFF2732 0.19 -0.0
327,249 - GFF2732 0.19 +0.0
327,249 - GFF2732 0.19 +0.7
327,328 + GFF2732 0.21 -0.2
327,446 + GFF2732 0.24 -2.0
327,447 - GFF2732 0.24 +0.8
327,447 - GFF2732 0.24 +0.1
327,447 - GFF2732 0.24 +0.2

Or see this region's nucleotide sequence