Experiment: Ying_all64 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2726 and GFF2727 are separated by 48 nucleotides GFF2727 and GFF2728 are separated by 10 nucleotides
GFF2726 - Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12), at 316,480 to 319,488
GFF2726
GFF2727 - JmjC domain protein, at 319,537 to 320,595
GFF2727
GFF2728 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 320,606 to 323,590
GFF2728
Position (kb) 319
320
321 Strain fitness (log2 ratio) -1
0
1
2
3 at 319.228 kb on + strand at 319.309 kb on + strand at 319.309 kb on + strand at 319.309 kb on + strand at 319.310 kb on - strand at 319.310 kb on - strand at 319.310 kb on - strand at 319.589 kb on - strand at 319.885 kb on + strand, within GFF2727 at 319.885 kb on + strand, within GFF2727 at 319.886 kb on - strand, within GFF2727 at 319.886 kb on - strand, within GFF2727 at 319.886 kb on - strand, within GFF2727 at 319.886 kb on - strand, within GFF2727 at 320.029 kb on + strand, within GFF2727 at 320.029 kb on + strand, within GFF2727 at 320.029 kb on + strand, within GFF2727 at 320.116 kb on + strand, within GFF2727 at 320.116 kb on + strand, within GFF2727 at 320.116 kb on + strand, within GFF2727 at 320.116 kb on + strand, within GFF2727 at 320.117 kb on - strand, within GFF2727 at 320.117 kb on - strand, within GFF2727 at 320.117 kb on - strand, within GFF2727 at 320.119 kb on + strand, within GFF2727 at 320.120 kb on - strand, within GFF2727 at 320.120 kb on - strand, within GFF2727 at 320.120 kb on - strand, within GFF2727 at 320.120 kb on - strand, within GFF2727 at 320.356 kb on + strand, within GFF2727 at 320.357 kb on - strand, within GFF2727 at 320.357 kb on - strand, within GFF2727 at 320.374 kb on + strand, within GFF2727 at 320.374 kb on + strand, within GFF2727 at 320.375 kb on - strand, within GFF2727 at 320.375 kb on - strand, within GFF2727 at 320.560 kb on + strand at 320.561 kb on - strand at 320.561 kb on - strand at 320.561 kb on - strand at 320.715 kb on + strand at 320.715 kb on + strand at 320.908 kb on - strand, within GFF2728 at 321.251 kb on + strand, within GFF2728 at 321.251 kb on + strand, within GFF2728 at 321.251 kb on + strand, within GFF2728 at 321.333 kb on + strand, within GFF2728 at 321.334 kb on - strand, within GFF2728 at 321.465 kb on + strand, within GFF2728 at 321.466 kb on - strand, within GFF2728
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3 remove 319,228 + -0.7 319,309 + -0.7 319,309 + -0.8 319,309 + -1.4 319,310 - -1.4 319,310 - -0.7 319,310 - +0.5 319,589 - -1.0 319,885 + GFF2727 0.33 +0.0 319,885 + GFF2727 0.33 +0.2 319,886 - GFF2727 0.33 +0.2 319,886 - GFF2727 0.33 -0.4 319,886 - GFF2727 0.33 +0.7 319,886 - GFF2727 0.33 -1.2 320,029 + GFF2727 0.46 +0.3 320,029 + GFF2727 0.46 +0.5 320,029 + GFF2727 0.46 -0.0 320,116 + GFF2727 0.55 -1.3 320,116 + GFF2727 0.55 +0.2 320,116 + GFF2727 0.55 +0.2 320,116 + GFF2727 0.55 -0.1 320,117 - GFF2727 0.55 -0.1 320,117 - GFF2727 0.55 -0.4 320,117 - GFF2727 0.55 -0.3 320,119 + GFF2727 0.55 +0.9 320,120 - GFF2727 0.55 +0.3 320,120 - GFF2727 0.55 +0.1 320,120 - GFF2727 0.55 -0.8 320,120 - GFF2727 0.55 +0.1 320,356 + GFF2727 0.77 -0.5 320,357 - GFF2727 0.77 -0.2 320,357 - GFF2727 0.77 -0.3 320,374 + GFF2727 0.79 -0.6 320,374 + GFF2727 0.79 -1.0 320,375 - GFF2727 0.79 +0.3 320,375 - GFF2727 0.79 -1.0 320,560 + +0.1 320,561 - +0.2 320,561 - +0.5 320,561 - -0.3 320,715 + +0.5 320,715 + -0.6 320,908 - GFF2728 0.10 -1.0 321,251 + GFF2728 0.22 -1.0 321,251 + GFF2728 0.22 -0.2 321,251 + GFF2728 0.22 +1.6 321,333 + GFF2728 0.24 +0.5 321,334 - GFF2728 0.24 +0.1 321,465 + GFF2728 0.29 -0.1 321,466 - GFF2728 0.29 +3.2
Or see this region's nucleotide sequence