Experiment: Ying_all64 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2723 and GFF2724 are separated by 670 nucleotides GFF2724 and GFF2725 are separated by 4 nucleotides GFF2725 and GFF2726 are separated by 68 nucleotides
GFF2723 - hypothetical protein, at 313,146 to 313,694
GFF2723
GFF2724 - hypothetical protein, at 314,365 to 315,942
GFF2724
GFF2725 - Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system, at 315,947 to 316,411
GFF2725
GFF2726 - Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12), at 316,480 to 319,488
GFF2726
Position (kb) 314
315
316 Strain fitness (log2 ratio) -2
-1
0
1
2 at 313.767 kb on + strand at 313.774 kb on - strand at 313.788 kb on - strand at 313.788 kb on - strand at 313.928 kb on + strand at 313.928 kb on + strand at 314.068 kb on - strand at 314.068 kb on - strand at 314.068 kb on - strand at 314.068 kb on - strand at 314.068 kb on - strand at 314.068 kb on - strand at 314.068 kb on - strand at 314.082 kb on + strand at 314.083 kb on - strand at 314.186 kb on - strand at 314.186 kb on - strand at 314.237 kb on - strand at 314.237 kb on - strand at 314.304 kb on + strand at 314.304 kb on + strand at 314.305 kb on - strand at 314.305 kb on - strand at 314.305 kb on - strand at 314.305 kb on - strand at 314.305 kb on - strand at 314.394 kb on + strand at 314.394 kb on + strand at 314.394 kb on + strand at 314.394 kb on + strand at 314.394 kb on + strand at 314.394 kb on + strand at 314.394 kb on + strand at 314.395 kb on - strand at 314.395 kb on - strand at 314.395 kb on - strand at 314.395 kb on - strand at 314.395 kb on - strand at 314.395 kb on - strand at 314.395 kb on - strand at 314.395 kb on - strand at 314.395 kb on - strand at 314.420 kb on + strand at 314.420 kb on + strand at 314.421 kb on - strand at 314.421 kb on - strand at 314.421 kb on - strand at 314.545 kb on + strand, within GFF2724 at 314.545 kb on + strand, within GFF2724 at 314.581 kb on + strand, within GFF2724 at 314.581 kb on + strand, within GFF2724 at 314.582 kb on - strand, within GFF2724 at 314.582 kb on - strand, within GFF2724 at 314.593 kb on + strand, within GFF2724 at 314.819 kb on + strand, within GFF2724 at 314.819 kb on + strand, within GFF2724 at 314.832 kb on + strand, within GFF2724 at 314.832 kb on + strand, within GFF2724 at 314.832 kb on + strand, within GFF2724 at 314.833 kb on - strand, within GFF2724 at 314.833 kb on - strand, within GFF2724 at 314.944 kb on + strand, within GFF2724 at 314.945 kb on - strand, within GFF2724 at 314.945 kb on - strand, within GFF2724 at 314.945 kb on - strand, within GFF2724 at 315.104 kb on + strand, within GFF2724 at 315.104 kb on + strand, within GFF2724 at 315.105 kb on - strand, within GFF2724 at 315.112 kb on + strand, within GFF2724 at 315.113 kb on - strand, within GFF2724 at 315.113 kb on - strand, within GFF2724 at 315.113 kb on - strand, within GFF2724 at 315.113 kb on - strand, within GFF2724 at 315.113 kb on - strand, within GFF2724 at 315.179 kb on - strand, within GFF2724 at 315.179 kb on - strand, within GFF2724 at 315.179 kb on - strand, within GFF2724 at 315.179 kb on - strand, within GFF2724 at 315.373 kb on + strand, within GFF2724 at 315.373 kb on + strand, within GFF2724 at 315.374 kb on - strand, within GFF2724 at 315.374 kb on - strand, within GFF2724 at 315.411 kb on - strand, within GFF2724 at 315.411 kb on - strand, within GFF2724 at 315.412 kb on + strand, within GFF2724 at 315.412 kb on + strand, within GFF2724 at 315.413 kb on - strand, within GFF2724 at 315.451 kb on + strand, within GFF2724 at 315.451 kb on + strand, within GFF2724 at 315.452 kb on - strand, within GFF2724 at 315.452 kb on - strand, within GFF2724 at 315.524 kb on - strand, within GFF2724 at 315.547 kb on + strand, within GFF2724 at 315.548 kb on - strand, within GFF2724 at 315.548 kb on - strand, within GFF2724 at 315.565 kb on + strand, within GFF2724 at 315.566 kb on - strand, within GFF2724 at 315.566 kb on - strand, within GFF2724 at 315.566 kb on - strand, within GFF2724 at 315.566 kb on - strand, within GFF2724 at 315.585 kb on + strand, within GFF2724 at 315.586 kb on - strand, within GFF2724 at 315.592 kb on + strand, within GFF2724 at 315.592 kb on + strand, within GFF2724 at 315.592 kb on + strand, within GFF2724 at 315.592 kb on + strand, within GFF2724 at 315.592 kb on + strand, within GFF2724 at 315.592 kb on + strand, within GFF2724 at 315.592 kb on + strand, within GFF2724 at 315.593 kb on - strand, within GFF2724 at 315.593 kb on - strand, within GFF2724 at 315.593 kb on - strand, within GFF2724 at 315.593 kb on - strand, within GFF2724 at 315.593 kb on - strand, within GFF2724 at 315.593 kb on - strand, within GFF2724 at 315.593 kb on - strand, within GFF2724 at 315.593 kb on - strand, within GFF2724 at 315.593 kb on - strand, within GFF2724 at 315.685 kb on + strand, within GFF2724 at 315.685 kb on + strand, within GFF2724 at 315.686 kb on - strand, within GFF2724 at 315.686 kb on - strand, within GFF2724 at 315.686 kb on - strand, within GFF2724 at 315.686 kb on - strand, within GFF2724 at 315.686 kb on - strand, within GFF2724 at 315.727 kb on + strand, within GFF2724 at 315.748 kb on + strand, within GFF2724 at 315.749 kb on - strand, within GFF2724 at 315.795 kb on + strand at 315.795 kb on + strand at 315.795 kb on + strand at 315.795 kb on + strand at 315.795 kb on + strand at 315.795 kb on + strand at 315.795 kb on + strand at 315.795 kb on + strand at 315.795 kb on + strand at 315.795 kb on + strand at 315.795 kb on + strand at 315.795 kb on + strand at 315.795 kb on + strand at 315.796 kb on - strand at 315.796 kb on - strand at 315.796 kb on - strand at 315.796 kb on - strand at 315.796 kb on - strand at 315.796 kb on - strand at 315.838 kb on + strand at 315.839 kb on - strand at 315.847 kb on + strand at 315.847 kb on + strand at 315.848 kb on - strand at 315.871 kb on + strand at 315.872 kb on - strand at 315.901 kb on + strand at 315.901 kb on + strand at 315.901 kb on + strand at 315.901 kb on + strand at 315.902 kb on - strand at 315.902 kb on - strand at 315.902 kb on - strand at 315.902 kb on - strand at 315.993 kb on + strand at 315.993 kb on + strand at 315.993 kb on + strand at 315.993 kb on + strand at 315.994 kb on - strand, within GFF2725 at 315.994 kb on - strand, within GFF2725 at 315.994 kb on - strand, within GFF2725 at 315.994 kb on - strand, within GFF2725 at 316.089 kb on + strand, within GFF2725 at 316.089 kb on + strand, within GFF2725 at 316.090 kb on - strand, within GFF2725 at 316.090 kb on - strand, within GFF2725 at 316.251 kb on + strand, within GFF2725 at 316.251 kb on + strand, within GFF2725 at 316.252 kb on - strand, within GFF2725 at 316.263 kb on + strand, within GFF2725 at 316.263 kb on + strand, within GFF2725 at 316.264 kb on - strand, within GFF2725 at 316.264 kb on - strand, within GFF2725 at 316.264 kb on - strand, within GFF2725 at 316.703 kb on - strand at 316.703 kb on - strand at 316.853 kb on + strand, within GFF2726
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3 remove 313,767 + -0.6 313,774 - -0.4 313,788 - +0.7 313,788 - -0.2 313,928 + -0.5 313,928 + -0.1 314,068 - -0.4 314,068 - +0.5 314,068 - -0.3 314,068 - +0.1 314,068 - -0.7 314,068 - -0.2 314,068 - -0.8 314,082 + -0.2 314,083 - -1.0 314,186 - -0.2 314,186 - -0.4 314,237 - -0.1 314,237 - +0.0 314,304 + +0.9 314,304 + -0.5 314,305 - -0.6 314,305 - -0.8 314,305 - +0.3 314,305 - -1.1 314,305 - +0.0 314,394 + +0.2 314,394 + +0.0 314,394 + -0.4 314,394 + -1.3 314,394 + +0.0 314,394 + +0.3 314,394 + -0.3 314,395 - +0.0 314,395 - -0.2 314,395 - -0.0 314,395 - -0.2 314,395 - +0.2 314,395 - +0.6 314,395 - -0.3 314,395 - +0.2 314,395 - -0.1 314,420 + +0.2 314,420 + +0.0 314,421 - -0.1 314,421 - -0.1 314,421 - -1.4 314,545 + GFF2724 0.11 +0.8 314,545 + GFF2724 0.11 +0.0 314,581 + GFF2724 0.14 +0.1 314,581 + GFF2724 0.14 +0.1 314,582 - GFF2724 0.14 -0.1 314,582 - GFF2724 0.14 -0.7 314,593 + GFF2724 0.14 -1.3 314,819 + GFF2724 0.29 +0.0 314,819 + GFF2724 0.29 -0.3 314,832 + GFF2724 0.30 +2.2 314,832 + GFF2724 0.30 +0.2 314,832 + GFF2724 0.30 -0.1 314,833 - GFF2724 0.30 +0.2 314,833 - GFF2724 0.30 +0.5 314,944 + GFF2724 0.37 +0.8 314,945 - GFF2724 0.37 +0.7 314,945 - GFF2724 0.37 -0.2 314,945 - GFF2724 0.37 -0.7 315,104 + GFF2724 0.47 -0.2 315,104 + GFF2724 0.47 -1.1 315,105 - GFF2724 0.47 -0.3 315,112 + GFF2724 0.47 +0.9 315,113 - GFF2724 0.47 -0.0 315,113 - GFF2724 0.47 +0.1 315,113 - GFF2724 0.47 -0.5 315,113 - GFF2724 0.47 +0.5 315,113 - GFF2724 0.47 -0.2 315,179 - GFF2724 0.52 +0.1 315,179 - GFF2724 0.52 -1.9 315,179 - GFF2724 0.52 +0.4 315,179 - GFF2724 0.52 +0.6 315,373 + GFF2724 0.64 +0.1 315,373 + GFF2724 0.64 -0.4 315,374 - GFF2724 0.64 +0.1 315,374 - GFF2724 0.64 -0.4 315,411 - GFF2724 0.66 +1.0 315,411 - GFF2724 0.66 -1.3 315,412 + GFF2724 0.66 -0.7 315,412 + GFF2724 0.66 +0.3 315,413 - GFF2724 0.66 +0.6 315,451 + GFF2724 0.69 +0.0 315,451 + GFF2724 0.69 +0.9 315,452 - GFF2724 0.69 +0.1 315,452 - GFF2724 0.69 +0.5 315,524 - GFF2724 0.73 -1.0 315,547 + GFF2724 0.75 -0.1 315,548 - GFF2724 0.75 -0.0 315,548 - GFF2724 0.75 -0.4 315,565 + GFF2724 0.76 -0.2 315,566 - GFF2724 0.76 -0.2 315,566 - GFF2724 0.76 +0.0 315,566 - GFF2724 0.76 +0.5 315,566 - GFF2724 0.76 -0.4 315,585 + GFF2724 0.77 -0.2 315,586 - GFF2724 0.77 +0.2 315,592 + GFF2724 0.78 +0.6 315,592 + GFF2724 0.78 -0.4 315,592 + GFF2724 0.78 -1.4 315,592 + GFF2724 0.78 -0.2 315,592 + GFF2724 0.78 +0.2 315,592 + GFF2724 0.78 -0.2 315,592 + GFF2724 0.78 +0.5 315,593 - GFF2724 0.78 +0.1 315,593 - GFF2724 0.78 -0.3 315,593 - GFF2724 0.78 -1.2 315,593 - GFF2724 0.78 -1.0 315,593 - GFF2724 0.78 +0.2 315,593 - GFF2724 0.78 +0.6 315,593 - GFF2724 0.78 +0.0 315,593 - GFF2724 0.78 +0.2 315,593 - GFF2724 0.78 -0.3 315,685 + GFF2724 0.84 +0.7 315,685 + GFF2724 0.84 +1.0 315,686 - GFF2724 0.84 -0.2 315,686 - GFF2724 0.84 +0.4 315,686 - GFF2724 0.84 -0.3 315,686 - GFF2724 0.84 -0.5 315,686 - GFF2724 0.84 +0.7 315,727 + GFF2724 0.86 -0.4 315,748 + GFF2724 0.88 -0.1 315,749 - GFF2724 0.88 -0.8 315,795 + +0.2 315,795 + -0.1 315,795 + +0.3 315,795 + -0.3 315,795 + -0.3 315,795 + +0.5 315,795 + -0.4 315,795 + +1.0 315,795 + +0.5 315,795 + -1.0 315,795 + -0.9 315,795 + +0.0 315,795 + -0.0 315,796 - -0.3 315,796 - +1.0 315,796 - +0.1 315,796 - +0.0 315,796 - -0.8 315,796 - +0.2 315,838 + -1.0 315,839 - +0.1 315,847 + +0.3 315,847 + +0.2 315,848 - +1.8 315,871 + +0.4 315,872 - -0.6 315,901 + -0.5 315,901 + +0.2 315,901 + +0.2 315,901 + -0.2 315,902 - -0.2 315,902 - +0.5 315,902 - -0.2 315,902 - +1.0 315,993 + -0.4 315,993 + +0.5 315,993 + -0.8 315,993 + +0.6 315,994 - GFF2725 0.10 -0.1 315,994 - GFF2725 0.10 -0.9 315,994 - GFF2725 0.10 -0.4 315,994 - GFF2725 0.10 +0.5 316,089 + GFF2725 0.31 +0.3 316,089 + GFF2725 0.31 -0.7 316,090 - GFF2725 0.31 -0.9 316,090 - GFF2725 0.31 -0.4 316,251 + GFF2725 0.65 +1.2 316,251 + GFF2725 0.65 -0.9 316,252 - GFF2725 0.66 -0.5 316,263 + GFF2725 0.68 -0.3 316,263 + GFF2725 0.68 -1.0 316,264 - GFF2725 0.68 -0.2 316,264 - GFF2725 0.68 -0.4 316,264 - GFF2725 0.68 +0.5 316,703 - -1.1 316,703 - +0.6 316,853 + GFF2726 0.12 -0.4
Or see this region's nucleotide sequence