Experiment: Ying_all64 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2716 and GFF2717 are separated by 36 nucleotides GFF2717 and GFF2718 overlap by 4 nucleotides GFF2718 and GFF2719 are separated by 109 nucleotides
GFF2716 - Predicted endonuclease distantly related to archaeal Holliday junction resolvase, at 307,363 to 307,767
GFF2716
GFF2717 - Phosphoheptose isomerase (EC 5.3.1.-), at 307,804 to 308,427
GFF2717
GFF2718 - 21 kDa hemolysin precursor, at 308,424 to 309,083
GFF2718
GFF2719 - 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), at 309,193 to 310,095
GFF2719
Position (kb) 308
309
310 Strain fitness (log2 ratio) -2
-1
0
1 at 307.777 kb on + strand at 307.777 kb on + strand at 307.777 kb on + strand at 307.777 kb on + strand at 307.777 kb on + strand at 307.778 kb on - strand at 307.793 kb on - strand at 307.855 kb on + strand at 307.855 kb on + strand at 307.855 kb on + strand at 307.856 kb on - strand at 307.856 kb on - strand at 307.856 kb on - strand at 307.856 kb on - strand at 307.856 kb on - strand at 307.856 kb on - strand at 307.856 kb on - strand at 308.406 kb on + strand at 308.670 kb on + strand, within GFF2718 at 308.670 kb on + strand, within GFF2718 at 308.671 kb on - strand, within GFF2718 at 308.671 kb on - strand, within GFF2718 at 308.671 kb on - strand, within GFF2718 at 308.671 kb on - strand, within GFF2718 at 308.916 kb on + strand, within GFF2718 at 308.916 kb on + strand, within GFF2718 at 308.916 kb on + strand, within GFF2718 at 308.917 kb on - strand, within GFF2718 at 309.081 kb on + strand at 309.082 kb on - strand at 309.082 kb on - strand at 309.082 kb on - strand at 309.194 kb on + strand at 309.194 kb on + strand at 309.195 kb on - strand at 309.195 kb on - strand at 309.195 kb on - strand at 309.195 kb on - strand at 309.195 kb on - strand at 309.195 kb on - strand at 309.195 kb on - strand at 309.195 kb on - strand at 309.195 kb on - strand at 309.260 kb on + strand at 309.260 kb on + strand at 309.261 kb on - strand at 309.261 kb on - strand at 310.070 kb on + strand at 310.070 kb on + strand at 310.070 kb on + strand at 310.071 kb on - strand at 310.071 kb on - strand at 310.071 kb on - strand at 310.071 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3 remove 307,777 + +0.2 307,777 + -0.7 307,777 + -0.6 307,777 + -0.3 307,777 + +0.2 307,778 - +0.5 307,793 - +1.4 307,855 + +0.7 307,855 + +0.6 307,855 + +0.2 307,856 - +0.2 307,856 - +0.1 307,856 - +0.6 307,856 - +0.0 307,856 - +0.3 307,856 - +0.3 307,856 - +0.8 308,406 + +0.1 308,670 + GFF2718 0.37 -1.8 308,670 + GFF2718 0.37 -1.4 308,671 - GFF2718 0.37 -1.6 308,671 - GFF2718 0.37 -1.6 308,671 - GFF2718 0.37 -1.0 308,671 - GFF2718 0.37 -1.2 308,916 + GFF2718 0.75 -2.0 308,916 + GFF2718 0.75 -0.6 308,916 + GFF2718 0.75 -2.0 308,917 - GFF2718 0.75 -1.1 309,081 + +0.0 309,082 - -0.1 309,082 - -0.2 309,082 - -0.3 309,194 + -0.2 309,194 + -1.5 309,195 - -0.5 309,195 - -0.4 309,195 - +1.6 309,195 - -0.3 309,195 - +0.5 309,195 - -1.0 309,195 - +0.6 309,195 - -1.1 309,195 - +0.7 309,260 + -2.1 309,260 + -0.3 309,261 - -0.7 309,261 - -0.1 310,070 + -0.6 310,070 + +0.0 310,070 + +0.8 310,071 - +0.7 310,071 - -0.6 310,071 - +0.1 310,071 - +0.5
Or see this region's nucleotide sequence