Experiment: Ying_all64 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2623 and GFF2624 are separated by 168 nucleotides GFF2624 and GFF2625 are separated by 109 nucleotides
GFF2623 - transcriptional regulator, AraC family, at 215,539 to 216,519
GFF2623
GFF2624 - Putative branched-chain amino acid transporter substrate-binding protein, at 216,688 to 217,884
GFF2624
GFF2625 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 217,994 to 218,896
GFF2625
Position (kb) 216
217
218 Strain fitness (log2 ratio) -1
0
1
2
3 at 215.738 kb on + strand, within GFF2623 at 215.738 kb on + strand, within GFF2623 at 215.738 kb on + strand, within GFF2623 at 215.738 kb on + strand, within GFF2623 at 215.739 kb on - strand, within GFF2623 at 215.739 kb on - strand, within GFF2623 at 215.739 kb on - strand, within GFF2623 at 215.739 kb on - strand, within GFF2623 at 215.739 kb on - strand, within GFF2623 at 215.739 kb on - strand, within GFF2623 at 215.751 kb on + strand, within GFF2623 at 215.751 kb on + strand, within GFF2623 at 215.751 kb on + strand, within GFF2623 at 215.752 kb on - strand, within GFF2623 at 215.752 kb on - strand, within GFF2623 at 215.752 kb on - strand, within GFF2623 at 215.752 kb on - strand, within GFF2623 at 216.005 kb on + strand, within GFF2623 at 216.006 kb on - strand, within GFF2623 at 216.183 kb on - strand, within GFF2623 at 216.273 kb on - strand, within GFF2623 at 216.401 kb on + strand, within GFF2623 at 216.796 kb on + strand at 216.856 kb on + strand, within GFF2624 at 216.856 kb on + strand, within GFF2624 at 216.857 kb on - strand, within GFF2624 at 216.857 kb on - strand, within GFF2624 at 216.857 kb on - strand, within GFF2624 at 216.857 kb on - strand, within GFF2624 at 216.857 kb on - strand, within GFF2624 at 216.857 kb on - strand, within GFF2624 at 216.857 kb on - strand, within GFF2624 at 217.132 kb on + strand, within GFF2624 at 217.132 kb on + strand, within GFF2624 at 217.225 kb on + strand, within GFF2624 at 217.225 kb on + strand, within GFF2624 at 217.226 kb on - strand, within GFF2624 at 217.396 kb on + strand, within GFF2624 at 217.396 kb on + strand, within GFF2624 at 217.462 kb on + strand, within GFF2624 at 217.462 kb on + strand, within GFF2624 at 217.463 kb on - strand, within GFF2624 at 217.463 kb on - strand, within GFF2624 at 217.463 kb on - strand, within GFF2624 at 217.492 kb on + strand, within GFF2624 at 217.579 kb on + strand, within GFF2624 at 217.580 kb on - strand, within GFF2624 at 217.993 kb on + strand at 217.993 kb on + strand at 217.994 kb on - strand at 217.994 kb on - strand at 218.013 kb on + strand at 218.014 kb on - strand at 218.051 kb on + strand at 218.351 kb on + strand, within GFF2625 at 218.352 kb on - strand, within GFF2625 at 218.654 kb on + strand, within GFF2625 at 218.655 kb on - strand, within GFF2625 at 218.655 kb on - strand, within GFF2625 at 218.655 kb on - strand, within GFF2625 at 218.685 kb on - strand, within GFF2625 at 218.826 kb on - strand at 218.826 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3 remove 215,738 + GFF2623 0.20 -1.5 215,738 + GFF2623 0.20 +0.0 215,738 + GFF2623 0.20 +0.3 215,738 + GFF2623 0.20 -1.2 215,739 - GFF2623 0.20 -0.5 215,739 - GFF2623 0.20 +0.4 215,739 - GFF2623 0.20 +0.1 215,739 - GFF2623 0.20 -0.9 215,739 - GFF2623 0.20 -0.7 215,739 - GFF2623 0.20 +0.6 215,751 + GFF2623 0.22 +0.2 215,751 + GFF2623 0.22 -0.4 215,751 + GFF2623 0.22 +0.5 215,752 - GFF2623 0.22 -0.3 215,752 - GFF2623 0.22 -0.1 215,752 - GFF2623 0.22 -0.5 215,752 - GFF2623 0.22 -0.4 216,005 + GFF2623 0.48 +0.4 216,006 - GFF2623 0.48 -0.2 216,183 - GFF2623 0.66 -0.7 216,273 - GFF2623 0.75 +0.3 216,401 + GFF2623 0.88 +0.2 216,796 + -0.1 216,856 + GFF2624 0.14 +0.0 216,856 + GFF2624 0.14 +1.3 216,857 - GFF2624 0.14 -0.2 216,857 - GFF2624 0.14 -0.4 216,857 - GFF2624 0.14 +0.6 216,857 - GFF2624 0.14 +0.9 216,857 - GFF2624 0.14 +0.1 216,857 - GFF2624 0.14 -0.2 216,857 - GFF2624 0.14 -0.7 217,132 + GFF2624 0.37 -0.1 217,132 + GFF2624 0.37 +0.3 217,225 + GFF2624 0.45 -0.5 217,225 + GFF2624 0.45 -0.3 217,226 - GFF2624 0.45 +1.1 217,396 + GFF2624 0.59 +0.5 217,396 + GFF2624 0.59 +0.6 217,462 + GFF2624 0.65 +1.1 217,462 + GFF2624 0.65 +0.5 217,463 - GFF2624 0.65 -0.1 217,463 - GFF2624 0.65 -0.5 217,463 - GFF2624 0.65 -0.2 217,492 + GFF2624 0.67 +1.5 217,579 + GFF2624 0.74 +3.6 217,580 - GFF2624 0.75 +1.1 217,993 + +0.2 217,993 + +0.2 217,994 - -0.7 217,994 - +1.1 218,013 + +0.5 218,014 - +0.3 218,051 + -0.5 218,351 + GFF2625 0.40 -0.2 218,352 - GFF2625 0.40 -0.6 218,654 + GFF2625 0.73 +0.3 218,655 - GFF2625 0.73 -0.5 218,655 - GFF2625 0.73 -0.2 218,655 - GFF2625 0.73 -0.4 218,685 - GFF2625 0.77 -0.3 218,826 - -0.4 218,826 - -0.5
Or see this region's nucleotide sequence