Experiment: Ying_all64 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2610 and GFF2611 are separated by 31 nucleotides GFF2611 and GFF2612 are separated by 229 nucleotides GFF2612 and GFF2613 are separated by 142 nucleotides
GFF2610 - Patatin, at 202,567 to 203,832
GFF2610
GFF2611 - two-component hybrid sensor and regulator, at 203,864 to 205,645
GFF2611
GFF2612 - Ribosome hibernation protein YhbH, at 205,875 to 206,204
GFF2612
GFF2613 - PTS system nitrogen-specific IIA component, PtsN, at 206,347 to 206,817
GFF2613
Position (kb) 203
204
205
206 Strain fitness (log2 ratio) -2
-1
0
1
2 at 203.161 kb on + strand, within GFF2610 at 203.312 kb on + strand, within GFF2610 at 203.313 kb on - strand, within GFF2610 at 203.513 kb on + strand, within GFF2610 at 203.598 kb on - strand, within GFF2610 at 203.656 kb on + strand, within GFF2610 at 203.777 kb on + strand at 203.778 kb on - strand at 203.865 kb on + strand at 203.866 kb on - strand at 203.866 kb on - strand at 204.084 kb on + strand, within GFF2611 at 204.084 kb on + strand, within GFF2611 at 204.085 kb on - strand, within GFF2611 at 204.459 kb on + strand, within GFF2611 at 204.459 kb on + strand, within GFF2611 at 204.459 kb on + strand, within GFF2611 at 204.582 kb on + strand, within GFF2611 at 205.044 kb on + strand, within GFF2611 at 205.227 kb on + strand, within GFF2611 at 205.227 kb on + strand, within GFF2611 at 205.227 kb on + strand, within GFF2611 at 205.228 kb on - strand, within GFF2611 at 205.296 kb on + strand, within GFF2611 at 205.297 kb on - strand, within GFF2611 at 205.414 kb on - strand, within GFF2611 at 205.455 kb on + strand, within GFF2611 at 205.455 kb on + strand, within GFF2611 at 205.456 kb on - strand, within GFF2611 at 205.456 kb on - strand, within GFF2611 at 205.541 kb on + strand at 205.541 kb on + strand at 205.542 kb on - strand at 205.542 kb on - strand at 205.542 kb on - strand at 205.542 kb on - strand at 205.542 kb on - strand at 205.544 kb on + strand at 205.544 kb on + strand at 205.544 kb on + strand at 205.544 kb on + strand at 205.544 kb on + strand at 205.544 kb on + strand at 205.545 kb on - strand at 205.545 kb on - strand at 205.545 kb on - strand at 205.545 kb on - strand at 205.545 kb on - strand at 205.545 kb on - strand at 205.545 kb on - strand at 205.545 kb on - strand at 205.545 kb on - strand at 205.545 kb on - strand at 205.545 kb on - strand at 205.657 kb on + strand at 205.658 kb on - strand at 205.702 kb on + strand at 205.702 kb on + strand at 205.702 kb on + strand at 205.703 kb on - strand at 205.703 kb on - strand at 205.703 kb on - strand at 205.707 kb on + strand at 205.707 kb on + strand at 205.790 kb on + strand at 205.790 kb on + strand at 205.790 kb on + strand at 205.790 kb on + strand at 205.790 kb on + strand at 205.790 kb on + strand at 205.790 kb on + strand at 205.790 kb on + strand at 205.790 kb on + strand at 205.790 kb on + strand at 205.791 kb on - strand at 205.791 kb on - strand at 205.791 kb on - strand at 205.791 kb on - strand at 205.874 kb on + strand at 205.874 kb on + strand at 205.874 kb on + strand at 205.874 kb on + strand at 205.874 kb on + strand at 205.874 kb on + strand at 205.874 kb on + strand at 205.874 kb on + strand at 205.874 kb on + strand at 205.874 kb on + strand at 205.874 kb on + strand at 205.874 kb on + strand at 205.874 kb on + strand at 205.874 kb on + strand at 205.874 kb on + strand at 205.875 kb on - strand at 205.875 kb on - strand at 205.875 kb on - strand at 205.875 kb on - strand at 205.875 kb on - strand at 205.875 kb on - strand at 205.929 kb on + strand, within GFF2612 at 205.929 kb on + strand, within GFF2612 at 205.930 kb on - strand, within GFF2612 at 205.930 kb on - strand, within GFF2612 at 206.100 kb on + strand, within GFF2612 at 206.100 kb on + strand, within GFF2612 at 206.100 kb on + strand, within GFF2612 at 206.100 kb on + strand, within GFF2612 at 206.101 kb on - strand, within GFF2612 at 206.101 kb on - strand, within GFF2612 at 206.101 kb on - strand, within GFF2612 at 206.101 kb on - strand, within GFF2612 at 206.101 kb on - strand, within GFF2612 at 206.151 kb on + strand, within GFF2612 at 206.152 kb on - strand, within GFF2612 at 206.152 kb on - strand, within GFF2612 at 206.152 kb on - strand, within GFF2612 at 206.184 kb on - strand at 206.267 kb on + strand at 206.267 kb on + strand at 206.267 kb on + strand at 206.267 kb on + strand at 206.267 kb on + strand at 206.267 kb on + strand at 206.267 kb on + strand at 206.267 kb on + strand at 206.267 kb on + strand at 206.267 kb on + strand at 206.268 kb on - strand at 206.268 kb on - strand at 206.268 kb on - strand at 206.268 kb on - strand at 206.268 kb on - strand at 206.268 kb on - strand at 206.299 kb on - strand at 206.322 kb on + strand at 206.344 kb on + strand at 206.344 kb on + strand at 206.344 kb on + strand at 206.344 kb on + strand at 206.344 kb on + strand at 206.344 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3 remove 203,161 + GFF2610 0.47 -0.4 203,312 + GFF2610 0.59 -0.7 203,313 - GFF2610 0.59 -0.6 203,513 + GFF2610 0.75 -0.4 203,598 - GFF2610 0.81 -0.2 203,656 + GFF2610 0.86 -0.3 203,777 + -0.9 203,778 - -0.4 203,865 + +0.9 203,866 - +0.4 203,866 - +0.2 204,084 + GFF2611 0.12 +0.1 204,084 + GFF2611 0.12 +0.4 204,085 - GFF2611 0.12 -0.2 204,459 + GFF2611 0.33 -1.0 204,459 + GFF2611 0.33 -0.8 204,459 + GFF2611 0.33 +0.2 204,582 + GFF2611 0.40 -0.5 205,044 + GFF2611 0.66 +0.7 205,227 + GFF2611 0.76 +0.1 205,227 + GFF2611 0.76 +0.0 205,227 + GFF2611 0.76 +0.3 205,228 - GFF2611 0.77 -1.1 205,296 + GFF2611 0.80 -0.0 205,297 - GFF2611 0.80 +2.1 205,414 - GFF2611 0.87 +0.2 205,455 + GFF2611 0.89 +1.9 205,455 + GFF2611 0.89 -1.2 205,456 - GFF2611 0.89 +1.0 205,456 - GFF2611 0.89 +0.8 205,541 + -1.2 205,541 + +0.3 205,542 - +0.3 205,542 - -0.7 205,542 - +0.7 205,542 - -0.3 205,542 - +0.1 205,544 + +0.1 205,544 + +0.5 205,544 + +0.3 205,544 + -1.1 205,544 + +0.4 205,544 + -0.4 205,545 - -0.0 205,545 - -0.1 205,545 - -0.4 205,545 - -0.5 205,545 - +0.2 205,545 - -0.1 205,545 - +0.2 205,545 - +0.9 205,545 - +0.3 205,545 - +2.4 205,545 - +0.4 205,657 + -0.4 205,658 - +0.8 205,702 + +0.1 205,702 + +0.4 205,702 + +0.4 205,703 - +0.9 205,703 - -0.4 205,703 - +0.1 205,707 + +0.1 205,707 + +0.1 205,790 + -0.4 205,790 + +0.5 205,790 + -0.2 205,790 + -0.3 205,790 + -0.2 205,790 + -0.6 205,790 + -0.2 205,790 + -0.9 205,790 + -2.0 205,790 + +2.1 205,791 - +0.0 205,791 - +0.2 205,791 - -0.5 205,791 - +0.3 205,874 + +0.3 205,874 + -1.3 205,874 + -1.9 205,874 + +0.6 205,874 + -0.8 205,874 + -1.4 205,874 + -0.8 205,874 + -0.6 205,874 + -1.7 205,874 + +0.2 205,874 + -0.0 205,874 + -1.3 205,874 + -0.5 205,874 + -0.3 205,874 + +0.6 205,875 - -0.3 205,875 - -0.4 205,875 - -0.7 205,875 - -0.1 205,875 - -1.1 205,875 - -0.0 205,929 + GFF2612 0.16 +0.3 205,929 + GFF2612 0.16 -0.6 205,930 - GFF2612 0.17 -0.8 205,930 - GFF2612 0.17 -0.6 206,100 + GFF2612 0.68 -0.7 206,100 + GFF2612 0.68 +0.7 206,100 + GFF2612 0.68 -0.6 206,100 + GFF2612 0.68 +1.1 206,101 - GFF2612 0.68 -0.3 206,101 - GFF2612 0.68 -0.6 206,101 - GFF2612 0.68 -0.4 206,101 - GFF2612 0.68 -0.1 206,101 - GFF2612 0.68 -0.3 206,151 + GFF2612 0.84 -1.1 206,152 - GFF2612 0.84 -1.5 206,152 - GFF2612 0.84 +1.1 206,152 - GFF2612 0.84 +0.4 206,184 - +0.6 206,267 + -0.6 206,267 + +0.4 206,267 + -1.8 206,267 + +0.2 206,267 + +0.4 206,267 + +0.8 206,267 + +2.1 206,267 + -0.6 206,267 + +1.0 206,267 + +0.2 206,268 - +0.9 206,268 - +0.1 206,268 - +0.7 206,268 - -1.1 206,268 - -1.3 206,268 - +0.2 206,299 - -0.7 206,322 + -1.1 206,344 + -0.1 206,344 + -0.6 206,344 + +0.0 206,344 + -0.1 206,344 + +0.7 206,344 + +0.1
Or see this region's nucleotide sequence