Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2500

Experiment: Ying_all64 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2498 and GFF2499 are separated by 95 nucleotidesGFF2499 and GFF2500 are separated by 154 nucleotidesGFF2500 and GFF2501 are separated by 17 nucleotidesGFF2501 and GFF2502 are separated by 9 nucleotides GFF2498 - Response regulator receiver:Transcriptional regulatory protein, C- terminal, at 85,281 to 85,955 GFF2498 GFF2499 - Transcriptional regulator, MarR family, at 86,051 to 86,548 GFF2499 GFF2500 - RecA protein, at 86,703 to 87,818 GFF2500 GFF2501 - Regulatory protein RecX, at 87,836 to 88,297 GFF2501 GFF2502 - possible transmembrane-transport protein, at 88,307 to 89,839 GFF2502 Position (kb) 86 87 88Strain fitness (log2 ratio) -2 -1 0 1at 86.097 kb on + strandat 86.097 kb on + strandat 86.097 kb on + strandat 86.097 kb on + strandat 86.097 kb on + strandat 86.097 kb on + strandat 86.098 kb on - strandat 86.098 kb on - strandat 86.098 kb on - strandat 86.098 kb on - strandat 86.573 kb on + strandat 86.581 kb on - strandat 86.598 kb on + strandat 86.627 kb on + strandat 86.627 kb on + strandat 86.627 kb on + strandat 86.627 kb on - strandat 86.628 kb on - strandat 86.655 kb on - strandat 86.662 kb on + strandat 86.662 kb on + strandat 86.922 kb on + strand, within GFF2500at 87.037 kb on - strand, within GFF2500at 87.276 kb on + strand, within GFF2500at 87.381 kb on + strand, within GFF2500at 87.381 kb on + strand, within GFF2500at 87.381 kb on + strand, within GFF2500at 87.381 kb on + strand, within GFF2500at 87.381 kb on + strand, within GFF2500at 87.382 kb on - strand, within GFF2500at 87.382 kb on - strand, within GFF2500at 87.382 kb on - strand, within GFF2500at 87.382 kb on - strand, within GFF2500at 87.600 kb on + strand, within GFF2500at 87.601 kb on - strand, within GFF2500at 87.606 kb on + strand, within GFF2500at 87.606 kb on + strand, within GFF2500at 87.607 kb on - strand, within GFF2500at 88.554 kb on + strand, within GFF2502at 88.554 kb on + strand, within GFF2502at 88.555 kb on - strand, within GFF2502

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3
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86,097 + -0.1
86,097 + +0.2
86,097 + -0.2
86,097 + +0.5
86,097 + +0.2
86,097 + -0.5
86,098 - +0.1
86,098 - -0.1
86,098 - +0.6
86,098 - -0.5
86,573 + -2.3
86,581 - +0.1
86,598 + +0.3
86,627 + -0.1
86,627 + -0.0
86,627 + -0.3
86,627 - -0.5
86,628 - +0.2
86,655 - -1.3
86,662 + +0.3
86,662 + -0.0
86,922 + GFF2500 0.20 -1.2
87,037 - GFF2500 0.30 -0.5
87,276 + GFF2500 0.51 -0.1
87,381 + GFF2500 0.61 -0.4
87,381 + GFF2500 0.61 -0.5
87,381 + GFF2500 0.61 -0.4
87,381 + GFF2500 0.61 -1.3
87,381 + GFF2500 0.61 -1.5
87,382 - GFF2500 0.61 -1.1
87,382 - GFF2500 0.61 -1.8
87,382 - GFF2500 0.61 -0.9
87,382 - GFF2500 0.61 -0.4
87,600 + GFF2500 0.80 -1.7
87,601 - GFF2500 0.80 +0.5
87,606 + GFF2500 0.81 -1.2
87,606 + GFF2500 0.81 -0.9
87,607 - GFF2500 0.81 -1.6
88,554 + GFF2502 0.16 +0.6
88,554 + GFF2502 0.16 +0.1
88,555 - GFF2502 0.16 -1.3

Or see this region's nucleotide sequence