Experiment: Ying_all64 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2498 and GFF2499 are separated by 95 nucleotides GFF2499 and GFF2500 are separated by 154 nucleotides GFF2500 and GFF2501 are separated by 17 nucleotides GFF2501 and GFF2502 are separated by 9 nucleotides
GFF2498 - Response regulator receiver:Transcriptional regulatory protein, C- terminal, at 85,281 to 85,955
GFF2498
GFF2499 - Transcriptional regulator, MarR family, at 86,051 to 86,548
GFF2499
GFF2500 - RecA protein, at 86,703 to 87,818
GFF2500
GFF2501 - Regulatory protein RecX, at 87,836 to 88,297
GFF2501
GFF2502 - possible transmembrane-transport protein, at 88,307 to 89,839
GFF2502
Position (kb)
86
87
88 Strain fitness (log2 ratio)
-2
-1
0
1 at 86.097 kb on + strand at 86.097 kb on + strand at 86.097 kb on + strand at 86.097 kb on + strand at 86.097 kb on + strand at 86.097 kb on + strand at 86.098 kb on - strand at 86.098 kb on - strand at 86.098 kb on - strand at 86.098 kb on - strand at 86.573 kb on + strand at 86.581 kb on - strand at 86.598 kb on + strand at 86.627 kb on + strand at 86.627 kb on + strand at 86.627 kb on + strand at 86.627 kb on - strand at 86.628 kb on - strand at 86.655 kb on - strand at 86.662 kb on + strand at 86.662 kb on + strand at 86.922 kb on + strand, within GFF2500 at 87.037 kb on - strand, within GFF2500 at 87.276 kb on + strand, within GFF2500 at 87.381 kb on + strand, within GFF2500 at 87.381 kb on + strand, within GFF2500 at 87.381 kb on + strand, within GFF2500 at 87.381 kb on + strand, within GFF2500 at 87.381 kb on + strand, within GFF2500 at 87.382 kb on - strand, within GFF2500 at 87.382 kb on - strand, within GFF2500 at 87.382 kb on - strand, within GFF2500 at 87.382 kb on - strand, within GFF2500 at 87.600 kb on + strand, within GFF2500 at 87.601 kb on - strand, within GFF2500 at 87.606 kb on + strand, within GFF2500 at 87.606 kb on + strand, within GFF2500 at 87.607 kb on - strand, within GFF2500 at 88.554 kb on + strand, within GFF2502 at 88.554 kb on + strand, within GFF2502 at 88.555 kb on - strand, within GFF2502
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3 remove 86,097 + -0.1 86,097 + +0.2 86,097 + -0.2 86,097 + +0.5 86,097 + +0.2 86,097 + -0.5 86,098 - +0.1 86,098 - -0.1 86,098 - +0.6 86,098 - -0.5 86,573 + -2.3 86,581 - +0.1 86,598 + +0.3 86,627 + -0.1 86,627 + -0.0 86,627 + -0.3 86,627 - -0.5 86,628 - +0.2 86,655 - -1.3 86,662 + +0.3 86,662 + -0.0 86,922 + GFF2500 0.20 -1.2 87,037 - GFF2500 0.30 -0.5 87,276 + GFF2500 0.51 -0.1 87,381 + GFF2500 0.61 -0.4 87,381 + GFF2500 0.61 -0.5 87,381 + GFF2500 0.61 -0.4 87,381 + GFF2500 0.61 -1.3 87,381 + GFF2500 0.61 -1.5 87,382 - GFF2500 0.61 -1.1 87,382 - GFF2500 0.61 -1.8 87,382 - GFF2500 0.61 -0.9 87,382 - GFF2500 0.61 -0.4 87,600 + GFF2500 0.80 -1.7 87,601 - GFF2500 0.80 +0.5 87,606 + GFF2500 0.81 -1.2 87,606 + GFF2500 0.81 -0.9 87,607 - GFF2500 0.81 -1.6 88,554 + GFF2502 0.16 +0.6 88,554 + GFF2502 0.16 +0.1 88,555 - GFF2502 0.16 -1.3
Or see this region's nucleotide sequence