Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2495

Experiment: Ying_all64 rep A; time point 3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2493 and GFF2494 are separated by 16 nucleotidesGFF2494 and GFF2495 are separated by 91 nucleotidesGFF2495 and GFF2496 are separated by 23 nucleotidesGFF2496 and GFF2497 are separated by 4 nucleotides GFF2493 - Biotin--protein ligase (EC 6.3.4.9, EC 6.3.4.10, EC 6.3.4.11, EC 6.3.4.15), at 78,711 to 79,514 GFF2493 GFF2494 - Proteins containing SET domain, at 79,531 to 80,073 GFF2494 GFF2495 - DNA topoisomerase III, Burkholderia type (EC 5.99.1.2), at 80,165 to 83,107 GFF2495 GFF2496 - Glutathione S-transferase (EC 2.5.1.18), at 83,131 to 83,781 GFF2496 GFF2497 - Sensor protein basS/pmrB (EC 2.7.3.-), at 83,786 to 85,270 GFF2497 Position (kb) 80 81 82 83 84Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 79.479 kb on + strandat 79.480 kb on - strandat 79.480 kb on - strandat 79.613 kb on + strand, within GFF2494at 79.614 kb on - strand, within GFF2494at 79.637 kb on + strand, within GFF2494at 79.638 kb on - strand, within GFF2494at 79.638 kb on - strand, within GFF2494at 79.638 kb on - strand, within GFF2494at 79.661 kb on + strand, within GFF2494at 79.661 kb on + strand, within GFF2494at 79.661 kb on + strand, within GFF2494at 79.662 kb on - strand, within GFF2494at 79.662 kb on - strand, within GFF2494at 79.667 kb on + strand, within GFF2494at 79.667 kb on + strand, within GFF2494at 79.667 kb on + strand, within GFF2494at 79.667 kb on + strand, within GFF2494at 79.668 kb on - strand, within GFF2494at 79.668 kb on - strand, within GFF2494at 79.668 kb on - strand, within GFF2494at 79.668 kb on - strand, within GFF2494at 79.668 kb on - strand, within GFF2494at 79.668 kb on - strand, within GFF2494at 79.668 kb on - strand, within GFF2494at 79.668 kb on - strand, within GFF2494at 79.668 kb on - strand, within GFF2494at 79.668 kb on - strand, within GFF2494at 79.668 kb on - strand, within GFF2494at 79.829 kb on + strand, within GFF2494at 79.829 kb on + strand, within GFF2494at 79.829 kb on + strand, within GFF2494at 79.829 kb on + strand, within GFF2494at 79.829 kb on + strand, within GFF2494at 79.830 kb on - strand, within GFF2494at 79.830 kb on - strand, within GFF2494at 79.830 kb on - strand, within GFF2494at 79.830 kb on - strand, within GFF2494at 79.830 kb on - strand, within GFF2494at 79.907 kb on + strand, within GFF2494at 79.908 kb on - strand, within GFF2494at 79.908 kb on - strand, within GFF2494at 79.908 kb on - strand, within GFF2494at 79.908 kb on - strand, within GFF2494at 79.908 kb on - strand, within GFF2494at 79.908 kb on - strand, within GFF2494at 79.949 kb on + strand, within GFF2494at 79.949 kb on + strand, within GFF2494at 79.949 kb on + strand, within GFF2494at 79.949 kb on + strand, within GFF2494at 79.950 kb on - strand, within GFF2494at 79.950 kb on - strand, within GFF2494at 79.950 kb on - strand, within GFF2494at 80.083 kb on + strandat 80.083 kb on + strandat 80.083 kb on + strandat 80.083 kb on + strandat 80.084 kb on - strandat 80.084 kb on - strandat 80.136 kb on + strandat 80.136 kb on + strandat 80.137 kb on - strandat 80.137 kb on - strandat 80.160 kb on + strandat 80.160 kb on + strandat 80.160 kb on + strandat 80.160 kb on + strandat 80.161 kb on - strandat 80.161 kb on - strandat 80.161 kb on - strandat 80.161 kb on - strandat 80.161 kb on - strandat 82.499 kb on + strand, within GFF2495at 82.499 kb on + strand, within GFF2495at 82.499 kb on + strand, within GFF2495at 82.499 kb on + strand, within GFF2495at 82.499 kb on + strand, within GFF2495at 82.499 kb on + strand, within GFF2495at 82.499 kb on + strand, within GFF2495at 82.499 kb on + strand, within GFF2495at 82.499 kb on + strand, within GFF2495at 82.499 kb on + strand, within GFF2495at 82.499 kb on + strand, within GFF2495at 82.499 kb on + strand, within GFF2495at 82.499 kb on + strand, within GFF2495at 82.499 kb on + strand, within GFF2495at 82.500 kb on - strand, within GFF2495at 82.500 kb on - strand, within GFF2495at 82.500 kb on - strand, within GFF2495at 82.500 kb on - strand, within GFF2495at 82.500 kb on - strand, within GFF2495at 82.500 kb on - strand, within GFF2495at 82.970 kb on + strandat 82.970 kb on + strandat 82.970 kb on + strandat 82.971 kb on - strandat 82.971 kb on - strandat 82.971 kb on - strandat 82.971 kb on - strandat 83.146 kb on + strandat 83.147 kb on - strandat 83.147 kb on - strandat 83.147 kb on - strandat 83.147 kb on - strandat 83.260 kb on + strand, within GFF2496at 83.261 kb on - strand, within GFF2496at 83.519 kb on - strand, within GFF2496at 83.533 kb on + strand, within GFF2496at 83.620 kb on + strand, within GFF2496at 83.621 kb on - strand, within GFF2496at 83.621 kb on - strand, within GFF2496at 83.762 kb on + strandat 83.764 kb on + strandat 83.764 kb on + strandat 83.764 kb on + strandat 83.764 kb on + strandat 83.764 kb on + strandat 83.765 kb on - strandat 83.765 kb on - strandat 83.765 kb on - strandat 83.765 kb on - strandat 83.765 kb on - strandat 83.961 kb on + strand, within GFF2497at 83.961 kb on + strand, within GFF2497at 83.962 kb on - strand, within GFF2497at 83.962 kb on - strand, within GFF2497at 84.093 kb on + strand, within GFF2497at 84.093 kb on + strand, within GFF2497at 84.094 kb on - strand, within GFF2497at 84.094 kb on - strand, within GFF2497

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3
remove
79,479 + -0.5
79,480 - +0.6
79,480 - -0.1
79,613 + GFF2494 0.15 +0.1
79,614 - GFF2494 0.15 +0.8
79,637 + GFF2494 0.20 +1.1
79,638 - GFF2494 0.20 +0.9
79,638 - GFF2494 0.20 -0.5
79,638 - GFF2494 0.20 +0.6
79,661 + GFF2494 0.24 +0.7
79,661 + GFF2494 0.24 +0.2
79,661 + GFF2494 0.24 +1.1
79,662 - GFF2494 0.24 -1.4
79,662 - GFF2494 0.24 -0.4
79,667 + GFF2494 0.25 -0.3
79,667 + GFF2494 0.25 +0.1
79,667 + GFF2494 0.25 -0.7
79,667 + GFF2494 0.25 -0.6
79,668 - GFF2494 0.25 +1.5
79,668 - GFF2494 0.25 -0.0
79,668 - GFF2494 0.25 -0.8
79,668 - GFF2494 0.25 +0.2
79,668 - GFF2494 0.25 -0.5
79,668 - GFF2494 0.25 -0.4
79,668 - GFF2494 0.25 -0.9
79,668 - GFF2494 0.25 -0.2
79,668 - GFF2494 0.25 +0.1
79,668 - GFF2494 0.25 -0.3
79,668 - GFF2494 0.25 -0.3
79,829 + GFF2494 0.55 +1.1
79,829 + GFF2494 0.55 -0.7
79,829 + GFF2494 0.55 -1.5
79,829 + GFF2494 0.55 +0.2
79,829 + GFF2494 0.55 -0.7
79,830 - GFF2494 0.55 -0.7
79,830 - GFF2494 0.55 -0.9
79,830 - GFF2494 0.55 +0.1
79,830 - GFF2494 0.55 -0.5
79,830 - GFF2494 0.55 -0.0
79,907 + GFF2494 0.69 +0.3
79,908 - GFF2494 0.69 -0.7
79,908 - GFF2494 0.69 -0.4
79,908 - GFF2494 0.69 +0.5
79,908 - GFF2494 0.69 -0.3
79,908 - GFF2494 0.69 -0.3
79,908 - GFF2494 0.69 -0.1
79,949 + GFF2494 0.77 -0.3
79,949 + GFF2494 0.77 -0.1
79,949 + GFF2494 0.77 +0.7
79,949 + GFF2494 0.77 -0.3
79,950 - GFF2494 0.77 -0.6
79,950 - GFF2494 0.77 +0.3
79,950 - GFF2494 0.77 +0.7
80,083 + +1.5
80,083 + +0.1
80,083 + -1.0
80,083 + +0.1
80,084 - +0.7
80,084 - +0.0
80,136 + +1.1
80,136 + +1.4
80,137 - -0.9
80,137 - -0.7
80,160 + -0.6
80,160 + +2.1
80,160 + -1.3
80,160 + -0.7
80,161 - -1.3
80,161 - -0.9
80,161 - -1.5
80,161 - -1.7
80,161 - -1.3
82,499 + GFF2495 0.79 -2.5
82,499 + GFF2495 0.79 -2.9
82,499 + GFF2495 0.79 +0.1
82,499 + GFF2495 0.79 -2.1
82,499 + GFF2495 0.79 -2.4
82,499 + GFF2495 0.79 -2.1
82,499 + GFF2495 0.79 -0.5
82,499 + GFF2495 0.79 -0.7
82,499 + GFF2495 0.79 -2.2
82,499 + GFF2495 0.79 -1.9
82,499 + GFF2495 0.79 -1.5
82,499 + GFF2495 0.79 -0.5
82,499 + GFF2495 0.79 -2.3
82,499 + GFF2495 0.79 -2.6
82,500 - GFF2495 0.79 -2.6
82,500 - GFF2495 0.79 -1.9
82,500 - GFF2495 0.79 -2.1
82,500 - GFF2495 0.79 +0.1
82,500 - GFF2495 0.79 -0.5
82,500 - GFF2495 0.79 -2.0
82,970 + +0.1
82,970 + +0.3
82,970 + -0.0
82,971 - -0.1
82,971 - +1.2
82,971 - -0.4
82,971 - -0.2
83,146 + +0.5
83,147 - -0.1
83,147 - -0.6
83,147 - -1.5
83,147 - +0.1
83,260 + GFF2496 0.20 -0.5
83,261 - GFF2496 0.20 +1.1
83,519 - GFF2496 0.60 +0.3
83,533 + GFF2496 0.62 -0.4
83,620 + GFF2496 0.75 +0.5
83,621 - GFF2496 0.75 -0.1
83,621 - GFF2496 0.75 -0.1
83,762 + +0.1
83,764 + +0.8
83,764 + -0.3
83,764 + +0.3
83,764 + -0.3
83,764 + -1.0
83,765 - -0.2
83,765 - +1.3
83,765 - -0.3
83,765 - +1.1
83,765 - +0.4
83,961 + GFF2497 0.12 -1.2
83,961 + GFF2497 0.12 +0.1
83,962 - GFF2497 0.12 -0.8
83,962 - GFF2497 0.12 +0.6
84,093 + GFF2497 0.21 -0.3
84,093 + GFF2497 0.21 +2.8
84,094 - GFF2497 0.21 -0.5
84,094 - GFF2497 0.21 -0.3

Or see this region's nucleotide sequence