Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2495

Experiment: Ying_all64 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 3
79,479	+				-0.5
79,480	-				+0.6
79,480	-				-0.1
79,613	+		GFF2494	0.15	+0.1
79,614	-		GFF2494	0.15	+0.8
79,637	+		GFF2494	0.20	+1.1
79,638	-		GFF2494	0.20	+0.9
79,638	-		GFF2494	0.20	-0.5
79,638	-		GFF2494	0.20	+0.6
79,661	+		GFF2494	0.24	+0.7
79,661	+		GFF2494	0.24	+0.2
79,661	+		GFF2494	0.24	+1.1
79,662	-		GFF2494	0.24	-1.4
79,662	-		GFF2494	0.24	-0.4
79,667	+		GFF2494	0.25	-0.3
79,667	+		GFF2494	0.25	+0.1
79,667	+		GFF2494	0.25	-0.7
79,667	+		GFF2494	0.25	-0.6
79,668	-		GFF2494	0.25	+1.5
79,668	-		GFF2494	0.25	-0.0
79,668	-		GFF2494	0.25	-0.8
79,668	-		GFF2494	0.25	+0.2
79,668	-		GFF2494	0.25	-0.5
79,668	-		GFF2494	0.25	-0.4
79,668	-		GFF2494	0.25	-0.9
79,668	-		GFF2494	0.25	-0.2
79,668	-		GFF2494	0.25	+0.1
79,668	-		GFF2494	0.25	-0.3
79,668	-		GFF2494	0.25	-0.3
79,829	+		GFF2494	0.55	+1.1
79,829	+		GFF2494	0.55	-0.7
79,829	+		GFF2494	0.55	-1.5
79,829	+		GFF2494	0.55	+0.2
79,829	+		GFF2494	0.55	-0.7
79,830	-		GFF2494	0.55	-0.7
79,830	-		GFF2494	0.55	-0.9
79,830	-		GFF2494	0.55	+0.1
79,830	-		GFF2494	0.55	-0.5
79,830	-		GFF2494	0.55	-0.0
79,907	+		GFF2494	0.69	+0.3
79,908	-		GFF2494	0.69	-0.7
79,908	-		GFF2494	0.69	-0.4
79,908	-		GFF2494	0.69	+0.5
79,908	-		GFF2494	0.69	-0.3
79,908	-		GFF2494	0.69	-0.3
79,908	-		GFF2494	0.69	-0.1
79,949	+		GFF2494	0.77	-0.3
79,949	+		GFF2494	0.77	-0.1
79,949	+		GFF2494	0.77	+0.7
79,949	+		GFF2494	0.77	-0.3
79,950	-		GFF2494	0.77	-0.6
79,950	-		GFF2494	0.77	+0.3
79,950	-		GFF2494	0.77	+0.7
80,083	+				+1.5
80,083	+				+0.1
80,083	+				-1.0
80,083	+				+0.1
80,084	-				+0.7
80,084	-				+0.0
80,136	+				+1.1
80,136	+				+1.4
80,137	-				-0.9
80,137	-				-0.7
80,160	+				-0.6
80,160	+				+2.1
80,160	+				-1.3
80,160	+				-0.7
80,161	-				-1.3
80,161	-				-0.9
80,161	-				-1.5
80,161	-				-1.7
80,161	-				-1.3
82,499	+		GFF2495	0.79	-2.5
82,499	+		GFF2495	0.79	-2.9
82,499	+		GFF2495	0.79	+0.1
82,499	+		GFF2495	0.79	-2.1
82,499	+		GFF2495	0.79	-2.4
82,499	+		GFF2495	0.79	-2.1
82,499	+		GFF2495	0.79	-0.5
82,499	+		GFF2495	0.79	-0.7
82,499	+		GFF2495	0.79	-2.2
82,499	+		GFF2495	0.79	-1.9
82,499	+		GFF2495	0.79	-1.5
82,499	+		GFF2495	0.79	-0.5
82,499	+		GFF2495	0.79	-2.3
82,499	+		GFF2495	0.79	-2.6
82,500	-		GFF2495	0.79	-2.6
82,500	-		GFF2495	0.79	-1.9
82,500	-		GFF2495	0.79	-2.1
82,500	-		GFF2495	0.79	+0.1
82,500	-		GFF2495	0.79	-0.5
82,500	-		GFF2495	0.79	-2.0
82,970	+				+0.1
82,970	+				+0.3
82,970	+				-0.0
82,971	-				-0.1
82,971	-				+1.2
82,971	-				-0.4
82,971	-				-0.2
83,146	+				+0.5
83,147	-				-0.1
83,147	-				-0.6
83,147	-				-1.5
83,147	-				+0.1
83,260	+		GFF2496	0.20	-0.5
83,261	-		GFF2496	0.20	+1.1
83,519	-		GFF2496	0.60	+0.3
83,533	+		GFF2496	0.62	-0.4
83,620	+		GFF2496	0.75	+0.5
83,621	-		GFF2496	0.75	-0.1
83,621	-		GFF2496	0.75	-0.1
83,762	+				+0.1
83,764	+				+0.8
83,764	+				-0.3
83,764	+				+0.3
83,764	+				-0.3
83,764	+				-1.0
83,765	-				-0.2
83,765	-				+1.3
83,765	-				-0.3
83,765	-				+1.1
83,765	-				+0.4
83,961	+		GFF2497	0.12	-1.2
83,961	+		GFF2497	0.12	+0.1
83,962	-		GFF2497	0.12	-0.8
83,962	-		GFF2497	0.12	+0.6
84,093	+		GFF2497	0.21	-0.3
84,093	+		GFF2497	0.21	+2.8
84,094	-		GFF2497	0.21	-0.5
84,094	-		GFF2497	0.21	-0.3