Experiment: Ying_all64 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2493 and GFF2494 are separated by 16 nucleotides GFF2494 and GFF2495 are separated by 91 nucleotides GFF2495 and GFF2496 are separated by 23 nucleotides GFF2496 and GFF2497 are separated by 4 nucleotides
GFF2493 - Biotin--protein ligase (EC 6.3.4.9, EC 6.3.4.10, EC 6.3.4.11, EC 6.3.4.15), at 78,711 to 79,514
GFF2493
GFF2494 - Proteins containing SET domain, at 79,531 to 80,073
GFF2494
GFF2495 - DNA topoisomerase III, Burkholderia type (EC 5.99.1.2), at 80,165 to 83,107
GFF2495
GFF2496 - Glutathione S-transferase (EC 2.5.1.18), at 83,131 to 83,781
GFF2496
GFF2497 - Sensor protein basS/pmrB (EC 2.7.3.-), at 83,786 to 85,270
GFF2497
Position (kb)
80
81
82
83
84 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 79.479 kb on + strand at 79.480 kb on - strand at 79.480 kb on - strand at 79.613 kb on + strand, within GFF2494 at 79.614 kb on - strand, within GFF2494 at 79.637 kb on + strand, within GFF2494 at 79.638 kb on - strand, within GFF2494 at 79.638 kb on - strand, within GFF2494 at 79.638 kb on - strand, within GFF2494 at 79.661 kb on + strand, within GFF2494 at 79.661 kb on + strand, within GFF2494 at 79.661 kb on + strand, within GFF2494 at 79.662 kb on - strand, within GFF2494 at 79.662 kb on - strand, within GFF2494 at 79.667 kb on + strand, within GFF2494 at 79.667 kb on + strand, within GFF2494 at 79.667 kb on + strand, within GFF2494 at 79.667 kb on + strand, within GFF2494 at 79.668 kb on - strand, within GFF2494 at 79.668 kb on - strand, within GFF2494 at 79.668 kb on - strand, within GFF2494 at 79.668 kb on - strand, within GFF2494 at 79.668 kb on - strand, within GFF2494 at 79.668 kb on - strand, within GFF2494 at 79.668 kb on - strand, within GFF2494 at 79.668 kb on - strand, within GFF2494 at 79.668 kb on - strand, within GFF2494 at 79.668 kb on - strand, within GFF2494 at 79.668 kb on - strand, within GFF2494 at 79.829 kb on + strand, within GFF2494 at 79.829 kb on + strand, within GFF2494 at 79.829 kb on + strand, within GFF2494 at 79.829 kb on + strand, within GFF2494 at 79.829 kb on + strand, within GFF2494 at 79.830 kb on - strand, within GFF2494 at 79.830 kb on - strand, within GFF2494 at 79.830 kb on - strand, within GFF2494 at 79.830 kb on - strand, within GFF2494 at 79.830 kb on - strand, within GFF2494 at 79.907 kb on + strand, within GFF2494 at 79.908 kb on - strand, within GFF2494 at 79.908 kb on - strand, within GFF2494 at 79.908 kb on - strand, within GFF2494 at 79.908 kb on - strand, within GFF2494 at 79.908 kb on - strand, within GFF2494 at 79.908 kb on - strand, within GFF2494 at 79.949 kb on + strand, within GFF2494 at 79.949 kb on + strand, within GFF2494 at 79.949 kb on + strand, within GFF2494 at 79.949 kb on + strand, within GFF2494 at 79.950 kb on - strand, within GFF2494 at 79.950 kb on - strand, within GFF2494 at 79.950 kb on - strand, within GFF2494 at 80.083 kb on + strand at 80.083 kb on + strand at 80.083 kb on + strand at 80.083 kb on + strand at 80.084 kb on - strand at 80.084 kb on - strand at 80.136 kb on + strand at 80.136 kb on + strand at 80.137 kb on - strand at 80.137 kb on - strand at 80.160 kb on + strand at 80.160 kb on + strand at 80.160 kb on + strand at 80.160 kb on + strand at 80.161 kb on - strand at 80.161 kb on - strand at 80.161 kb on - strand at 80.161 kb on - strand at 80.161 kb on - strand at 82.499 kb on + strand, within GFF2495 at 82.499 kb on + strand, within GFF2495 at 82.499 kb on + strand, within GFF2495 at 82.499 kb on + strand, within GFF2495 at 82.499 kb on + strand, within GFF2495 at 82.499 kb on + strand, within GFF2495 at 82.499 kb on + strand, within GFF2495 at 82.499 kb on + strand, within GFF2495 at 82.499 kb on + strand, within GFF2495 at 82.499 kb on + strand, within GFF2495 at 82.499 kb on + strand, within GFF2495 at 82.499 kb on + strand, within GFF2495 at 82.499 kb on + strand, within GFF2495 at 82.499 kb on + strand, within GFF2495 at 82.500 kb on - strand, within GFF2495 at 82.500 kb on - strand, within GFF2495 at 82.500 kb on - strand, within GFF2495 at 82.500 kb on - strand, within GFF2495 at 82.500 kb on - strand, within GFF2495 at 82.500 kb on - strand, within GFF2495 at 82.970 kb on + strand at 82.970 kb on + strand at 82.970 kb on + strand at 82.971 kb on - strand at 82.971 kb on - strand at 82.971 kb on - strand at 82.971 kb on - strand at 83.146 kb on + strand at 83.147 kb on - strand at 83.147 kb on - strand at 83.147 kb on - strand at 83.147 kb on - strand at 83.260 kb on + strand, within GFF2496 at 83.261 kb on - strand, within GFF2496 at 83.519 kb on - strand, within GFF2496 at 83.533 kb on + strand, within GFF2496 at 83.620 kb on + strand, within GFF2496 at 83.621 kb on - strand, within GFF2496 at 83.621 kb on - strand, within GFF2496 at 83.762 kb on + strand at 83.764 kb on + strand at 83.764 kb on + strand at 83.764 kb on + strand at 83.764 kb on + strand at 83.764 kb on + strand at 83.765 kb on - strand at 83.765 kb on - strand at 83.765 kb on - strand at 83.765 kb on - strand at 83.765 kb on - strand at 83.961 kb on + strand, within GFF2497 at 83.961 kb on + strand, within GFF2497 at 83.962 kb on - strand, within GFF2497 at 83.962 kb on - strand, within GFF2497 at 84.093 kb on + strand, within GFF2497 at 84.093 kb on + strand, within GFF2497 at 84.094 kb on - strand, within GFF2497 at 84.094 kb on - strand, within GFF2497
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3 remove 79,479 + -0.5 79,480 - +0.6 79,480 - -0.1 79,613 + GFF2494 0.15 +0.1 79,614 - GFF2494 0.15 +0.8 79,637 + GFF2494 0.20 +1.1 79,638 - GFF2494 0.20 +0.9 79,638 - GFF2494 0.20 -0.5 79,638 - GFF2494 0.20 +0.6 79,661 + GFF2494 0.24 +0.7 79,661 + GFF2494 0.24 +0.2 79,661 + GFF2494 0.24 +1.1 79,662 - GFF2494 0.24 -1.4 79,662 - GFF2494 0.24 -0.4 79,667 + GFF2494 0.25 -0.3 79,667 + GFF2494 0.25 +0.1 79,667 + GFF2494 0.25 -0.7 79,667 + GFF2494 0.25 -0.6 79,668 - GFF2494 0.25 +1.5 79,668 - GFF2494 0.25 -0.0 79,668 - GFF2494 0.25 -0.8 79,668 - GFF2494 0.25 +0.2 79,668 - GFF2494 0.25 -0.5 79,668 - GFF2494 0.25 -0.4 79,668 - GFF2494 0.25 -0.9 79,668 - GFF2494 0.25 -0.2 79,668 - GFF2494 0.25 +0.1 79,668 - GFF2494 0.25 -0.3 79,668 - GFF2494 0.25 -0.3 79,829 + GFF2494 0.55 +1.1 79,829 + GFF2494 0.55 -0.7 79,829 + GFF2494 0.55 -1.5 79,829 + GFF2494 0.55 +0.2 79,829 + GFF2494 0.55 -0.7 79,830 - GFF2494 0.55 -0.7 79,830 - GFF2494 0.55 -0.9 79,830 - GFF2494 0.55 +0.1 79,830 - GFF2494 0.55 -0.5 79,830 - GFF2494 0.55 -0.0 79,907 + GFF2494 0.69 +0.3 79,908 - GFF2494 0.69 -0.7 79,908 - GFF2494 0.69 -0.4 79,908 - GFF2494 0.69 +0.5 79,908 - GFF2494 0.69 -0.3 79,908 - GFF2494 0.69 -0.3 79,908 - GFF2494 0.69 -0.1 79,949 + GFF2494 0.77 -0.3 79,949 + GFF2494 0.77 -0.1 79,949 + GFF2494 0.77 +0.7 79,949 + GFF2494 0.77 -0.3 79,950 - GFF2494 0.77 -0.6 79,950 - GFF2494 0.77 +0.3 79,950 - GFF2494 0.77 +0.7 80,083 + +1.5 80,083 + +0.1 80,083 + -1.0 80,083 + +0.1 80,084 - +0.7 80,084 - +0.0 80,136 + +1.1 80,136 + +1.4 80,137 - -0.9 80,137 - -0.7 80,160 + -0.6 80,160 + +2.1 80,160 + -1.3 80,160 + -0.7 80,161 - -1.3 80,161 - -0.9 80,161 - -1.5 80,161 - -1.7 80,161 - -1.3 82,499 + GFF2495 0.79 -2.5 82,499 + GFF2495 0.79 -2.9 82,499 + GFF2495 0.79 +0.1 82,499 + GFF2495 0.79 -2.1 82,499 + GFF2495 0.79 -2.4 82,499 + GFF2495 0.79 -2.1 82,499 + GFF2495 0.79 -0.5 82,499 + GFF2495 0.79 -0.7 82,499 + GFF2495 0.79 -2.2 82,499 + GFF2495 0.79 -1.9 82,499 + GFF2495 0.79 -1.5 82,499 + GFF2495 0.79 -0.5 82,499 + GFF2495 0.79 -2.3 82,499 + GFF2495 0.79 -2.6 82,500 - GFF2495 0.79 -2.6 82,500 - GFF2495 0.79 -1.9 82,500 - GFF2495 0.79 -2.1 82,500 - GFF2495 0.79 +0.1 82,500 - GFF2495 0.79 -0.5 82,500 - GFF2495 0.79 -2.0 82,970 + +0.1 82,970 + +0.3 82,970 + -0.0 82,971 - -0.1 82,971 - +1.2 82,971 - -0.4 82,971 - -0.2 83,146 + +0.5 83,147 - -0.1 83,147 - -0.6 83,147 - -1.5 83,147 - +0.1 83,260 + GFF2496 0.20 -0.5 83,261 - GFF2496 0.20 +1.1 83,519 - GFF2496 0.60 +0.3 83,533 + GFF2496 0.62 -0.4 83,620 + GFF2496 0.75 +0.5 83,621 - GFF2496 0.75 -0.1 83,621 - GFF2496 0.75 -0.1 83,762 + +0.1 83,764 + +0.8 83,764 + -0.3 83,764 + +0.3 83,764 + -0.3 83,764 + -1.0 83,765 - -0.2 83,765 - +1.3 83,765 - -0.3 83,765 - +1.1 83,765 - +0.4 83,961 + GFF2497 0.12 -1.2 83,961 + GFF2497 0.12 +0.1 83,962 - GFF2497 0.12 -0.8 83,962 - GFF2497 0.12 +0.6 84,093 + GFF2497 0.21 -0.3 84,093 + GFF2497 0.21 +2.8 84,094 - GFF2497 0.21 -0.5 84,094 - GFF2497 0.21 -0.3
Or see this region's nucleotide sequence