Experiment: Ying_all64 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2409 and GFF2410 are separated by 29 nucleotides GFF2410 and GFF2411 are separated by 65 nucleotides GFF2411 and GFF2412 are separated by 5 nucleotides
GFF2409 - Sensor protein, at 55,758 to 57,071
GFF2409
GFF2410 - Two-component system response regulator QseB, at 57,101 to 57,871
GFF2410
GFF2411 - Phosphoglycerol transferase I (EC 2.7.8.20), at 57,937 to 59,697
GFF2411
GFF2412 - Phosphoglycerol transferase I (EC 2.7.8.20), at 59,703 to 60,581
GFF2412
Position (kb) 57
58
59
60 Strain fitness (log2 ratio) -1
0
1
2
3 at 57.062 kb on - strand at 57.258 kb on + strand, within GFF2410 at 57.502 kb on - strand, within GFF2410 at 57.898 kb on + strand at 59.008 kb on + strand, within GFF2411 at 59.009 kb on - strand, within GFF2411 at 59.023 kb on + strand, within GFF2411 at 59.024 kb on - strand, within GFF2411 at 59.033 kb on - strand, within GFF2411 at 59.033 kb on - strand, within GFF2411 at 59.039 kb on - strand, within GFF2411 at 59.123 kb on - strand, within GFF2411 at 59.326 kb on + strand, within GFF2411 at 59.335 kb on + strand, within GFF2411 at 59.820 kb on + strand, within GFF2412 at 59.820 kb on + strand, within GFF2412 at 60.072 kb on + strand, within GFF2412 at 60.408 kb on + strand, within GFF2412 at 60.408 kb on + strand, within GFF2412 at 60.497 kb on + strand at 60.498 kb on - strand at 60.498 kb on - strand at 60.543 kb on + strand at 60.559 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3 remove 57,062 - -0.1 57,258 + GFF2410 0.20 -0.3 57,502 - GFF2410 0.52 -1.1 57,898 + +0.1 59,008 + GFF2411 0.61 -0.4 59,009 - GFF2411 0.61 +2.0 59,023 + GFF2411 0.62 -0.5 59,024 - GFF2411 0.62 +0.4 59,033 - GFF2411 0.62 +0.1 59,033 - GFF2411 0.62 +2.9 59,039 - GFF2411 0.63 +0.2 59,123 - GFF2411 0.67 +0.7 59,326 + GFF2411 0.79 +0.4 59,335 + GFF2411 0.79 +0.1 59,820 + GFF2412 0.13 -0.2 59,820 + GFF2412 0.13 +1.0 60,072 + GFF2412 0.42 +0.1 60,408 + GFF2412 0.80 -0.3 60,408 + GFF2412 0.80 -0.1 60,497 + +1.7 60,498 - -0.3 60,498 - -0.1 60,543 + -0.0 60,559 - +0.7
Or see this region's nucleotide sequence