Experiment: Ying_all64 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2376 and GFF2377 are separated by 157 nucleotides GFF2377 and GFF2378 are separated by 112 nucleotides
GFF2376 - hypothetical protein, at 18,860 to 19,039
GFF2376
GFF2377 - hypothetical protein, at 19,197 to 19,559
GFF2377
GFF2378 - Possible transcription activator protein hfaB, at 19,672 to 21,261
GFF2378
Position (kb) 19
20 Strain fitness (log2 ratio) -2
-1
0
1 at 18.440 kb on + strand at 18.440 kb on + strand at 18.441 kb on - strand at 18.441 kb on - strand at 18.441 kb on - strand at 18.483 kb on + strand at 18.483 kb on + strand at 18.483 kb on + strand at 18.483 kb on + strand at 18.483 kb on + strand at 18.483 kb on + strand at 18.484 kb on - strand at 18.484 kb on - strand at 18.684 kb on + strand at 18.755 kb on + strand at 18.803 kb on + strand at 18.804 kb on - strand at 18.804 kb on - strand at 18.861 kb on + strand at 18.861 kb on + strand at 19.022 kb on + strand at 19.022 kb on + strand at 19.022 kb on + strand at 19.022 kb on + strand at 19.023 kb on - strand at 19.061 kb on - strand at 19.115 kb on - strand at 19.139 kb on + strand at 19.139 kb on + strand at 19.139 kb on + strand at 19.140 kb on - strand at 19.140 kb on - strand at 19.141 kb on + strand at 19.141 kb on + strand at 19.141 kb on + strand at 19.141 kb on + strand at 19.142 kb on - strand at 19.142 kb on - strand at 19.142 kb on - strand at 19.142 kb on - strand at 19.287 kb on + strand, within GFF2377 at 19.287 kb on + strand, within GFF2377 at 19.288 kb on - strand, within GFF2377 at 19.365 kb on + strand, within GFF2377 at 19.392 kb on + strand, within GFF2377 at 19.392 kb on + strand, within GFF2377 at 19.393 kb on - strand, within GFF2377 at 19.393 kb on - strand, within GFF2377 at 19.479 kb on + strand, within GFF2377 at 19.480 kb on - strand, within GFF2377 at 19.617 kb on + strand at 19.618 kb on - strand at 20.251 kb on - strand, within GFF2378 at 20.389 kb on + strand, within GFF2378 at 20.389 kb on + strand, within GFF2378 at 20.389 kb on + strand, within GFF2378 at 20.390 kb on - strand, within GFF2378 at 20.391 kb on - strand, within GFF2378 at 20.400 kb on + strand, within GFF2378 at 20.400 kb on + strand, within GFF2378 at 20.400 kb on + strand, within GFF2378 at 20.400 kb on + strand, within GFF2378 at 20.401 kb on - strand, within GFF2378 at 20.467 kb on + strand, within GFF2378 at 20.468 kb on - strand, within GFF2378 at 20.468 kb on - strand, within GFF2378 at 20.468 kb on - strand, within GFF2378
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3 remove 18,440 + -0.2 18,440 + -0.4 18,441 - -1.3 18,441 - -0.1 18,441 - +0.8 18,483 + -1.2 18,483 + -1.8 18,483 + -1.4 18,483 + -0.6 18,483 + -1.0 18,483 + +0.6 18,484 - -0.6 18,484 - -0.1 18,684 + +1.0 18,755 + -0.2 18,803 + +0.1 18,804 - +0.3 18,804 - -0.0 18,861 + -0.4 18,861 + -1.2 19,022 + -0.4 19,022 + -0.2 19,022 + -0.3 19,022 + +0.5 19,023 - +1.1 19,061 - +0.4 19,115 - -0.7 19,139 + +0.6 19,139 + -0.6 19,139 + +0.0 19,140 - -0.6 19,140 - +0.1 19,141 + +0.4 19,141 + +0.9 19,141 + +0.0 19,141 + -0.2 19,142 - +0.2 19,142 - -0.5 19,142 - +0.6 19,142 - -0.2 19,287 + GFF2377 0.25 +0.6 19,287 + GFF2377 0.25 +0.5 19,288 - GFF2377 0.25 -0.8 19,365 + GFF2377 0.46 -0.0 19,392 + GFF2377 0.54 -0.3 19,392 + GFF2377 0.54 +1.2 19,393 - GFF2377 0.54 -0.7 19,393 - GFF2377 0.54 -0.5 19,479 + GFF2377 0.78 -0.8 19,480 - GFF2377 0.78 -2.0 19,617 + -0.0 19,618 - -0.8 20,251 - GFF2378 0.36 -0.4 20,389 + GFF2378 0.45 -0.6 20,389 + GFF2378 0.45 +0.4 20,389 + GFF2378 0.45 +0.1 20,390 - GFF2378 0.45 +0.1 20,391 - GFF2378 0.45 +0.1 20,400 + GFF2378 0.46 +0.4 20,400 + GFF2378 0.46 +0.1 20,400 + GFF2378 0.46 -0.8 20,400 + GFF2378 0.46 +0.8 20,401 - GFF2378 0.46 -1.1 20,467 + GFF2378 0.50 -0.0 20,468 - GFF2378 0.50 +0.1 20,468 - GFF2378 0.50 +1.7 20,468 - GFF2378 0.50 -0.1
Or see this region's nucleotide sequence