Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2228

Experiment: Ying_all64 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 3
1,112,443	+		GFF2227	0.11	+0.1
1,112,584	+		GFF2227	0.31	+0.6
1,112,584	+		GFF2227	0.31	+0.6
1,112,585	-		GFF2227	0.31	+0.1
1,112,629	+		GFF2227	0.37	+1.1
1,112,630	-		GFF2227	0.37	-0.2
1,112,674	+		GFF2227	0.43	-0.5
1,112,704	+		GFF2227	0.47	+0.0
1,112,705	-		GFF2227	0.48	-0.7
1,112,738	-		GFF2227	0.52	+0.3
1,112,804	-		GFF2227	0.61	-0.7
1,112,836	+		GFF2227	0.66	-0.7
1,112,836	+		GFF2227	0.66	-1.1
1,112,878	+		GFF2227	0.72	-0.1
1,112,878	+		GFF2227	0.72	-0.8
1,112,999	-		GFF2227	0.88	-0.3
1,113,005	-		GFF2227	0.89	+0.5
1,113,141	-				+1.6
1,113,141	-				-1.0
1,113,449	+		GFF2228	0.55	-0.5
1,113,449	+		GFF2228	0.55	-0.4
1,113,973	+		GFF2229	0.12	-0.2
1,113,973	+		GFF2229	0.12	+1.2
1,113,974	-		GFF2229	0.12	-0.1
1,113,974	-		GFF2229	0.12	-0.7
1,114,234	+		GFF2229	0.26	-0.1
1,114,235	-		GFF2229	0.26	+0.1
1,114,235	-		GFF2229	0.26	+0.3
1,114,235	-		GFF2229	0.26	-0.5
1,114,352	-		GFF2229	0.32	-0.6
1,114,352	-		GFF2229	0.32	+0.3
1,114,426	+		GFF2229	0.36	-0.8
1,114,427	-		GFF2229	0.36	-0.3
1,114,427	-		GFF2229	0.36	+1.1
1,114,495	+		GFF2229	0.40	+0.5
1,114,496	-		GFF2229	0.40	+0.8
1,114,549	+		GFF2229	0.43	+0.8
1,114,549	+		GFF2229	0.43	+0.3
1,114,549	+		GFF2229	0.43	+0.5
1,114,549	+		GFF2229	0.43	-0.6
1,114,550	-		GFF2229	0.43	+0.1
1,114,550	-		GFF2229	0.43	-0.1
1,114,555	+		GFF2229	0.43	+0.4
1,114,556	-		GFF2229	0.43	-0.5
1,114,675	+		GFF2229	0.49	-1.5
1,114,675	+		GFF2229	0.49	-0.8
1,114,690	+		GFF2229	0.50	-0.9
1,114,691	-		GFF2229	0.50	-1.1
1,114,691	-		GFF2229	0.50	-0.4
1,114,691	-		GFF2229	0.50	-1.4
1,114,691	-		GFF2229	0.50	-1.3
1,114,691	-		GFF2229	0.50	-0.4
1,114,691	-		GFF2229	0.50	-0.7
1,114,691	-		GFF2229	0.50	+0.3
1,114,699	+		GFF2229	0.51	-0.2
1,114,699	+		GFF2229	0.51	-1.3