Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2197

Experiment: Ying_all64 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 3
1,085,577	+		GFF2196	0.16	+0.1
1,085,577	+		GFF2196	0.16	+0.4
1,085,577	+		GFF2196	0.16	-0.1
1,085,577	+		GFF2196	0.16	-1.0
1,085,577	+		GFF2196	0.16	+0.5
1,085,577	+		GFF2196	0.16	+0.2
1,085,578	-		GFF2196	0.16	-0.9
1,085,937	+		GFF2196	0.63	+0.2
1,085,938	-		GFF2196	0.63	-0.4
1,086,412	+		GFF2197	0.20	-0.1
1,086,412	+		GFF2197	0.20	-0.1
1,086,413	-		GFF2197	0.20	-0.2
1,086,932	-		GFF2197	0.88	+1.1
1,087,047	+				+0.0
1,087,048	-				+0.1
1,087,048	-				-0.1
1,087,257	+		GFF2198	0.22	+0.1
1,087,359	+		GFF2198	0.32	+1.1
1,087,359	+		GFF2198	0.32	-0.2
1,087,360	-		GFF2198	0.32	-0.2
1,087,538	+		GFF2198	0.48	+0.5
1,087,539	-		GFF2198	0.48	+0.3
1,087,543	-		GFF2198	0.49	-1.1
1,087,704	+		GFF2198	0.63	+0.8
1,087,875	+		GFF2198	0.79	-0.1
1,087,876	-		GFF2198	0.79	-0.7