Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2179

Experiment: Ying_all64 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 3
1,071,923	+		GFF2178	0.52	+0.1
1,071,923	+		GFF2178	0.52	-1.5
1,071,923	+		GFF2178	0.52	+0.3
1,071,923	+		GFF2178	0.52	+0.7
1,071,923	+		GFF2178	0.52	-0.7
1,071,923	+		GFF2178	0.52	+0.0
1,071,924	-		GFF2178	0.52	+0.3
1,072,386	-				+0.2
1,072,463	+				+0.3
1,072,833	-		GFF2179	0.39	+0.1
1,072,922	+		GFF2179	0.49	-1.2
1,072,922	+		GFF2179	0.49	-1.7
1,073,384	+				-0.1
1,073,384	+				-0.2
1,073,384	+				+0.1
1,073,759	+		GFF2180	0.35	-0.2
1,073,760	-		GFF2180	0.35	+0.4
1,073,760	-		GFF2180	0.35	+0.2
1,073,870	+		GFF2180	0.55	+1.1
1,073,870	+		GFF2180	0.55	+0.8
1,073,870	+		GFF2180	0.55	+0.1
1,073,871	-		GFF2180	0.55	-0.4
1,073,871	-		GFF2180	0.55	+0.4
1,073,871	-		GFF2180	0.55	+0.2
1,073,871	-		GFF2180	0.55	+1.0
1,073,871	-		GFF2180	0.55	+0.2
1,073,951	+		GFF2180	0.70	-0.7
1,073,951	+		GFF2180	0.70	-0.3
1,073,951	+		GFF2180	0.70	+0.2
1,073,951	+		GFF2180	0.70	-0.4
1,073,952	-		GFF2180	0.70	-0.0
1,073,952	-		GFF2180	0.70	+0.2
1,073,952	-		GFF2180	0.70	+0.1
1,073,952	-		GFF2180	0.70	-0.4
1,073,952	-		GFF2180	0.70	+1.1
1,074,006	-		GFF2180	0.80	+0.7
1,074,006	-		GFF2180	0.80	+0.8
1,074,029	+		GFF2180	0.84	+0.5
1,074,029	+		GFF2180	0.84	+1.4
1,074,030	-		GFF2180	0.84	+0.4
1,074,366	+		GFF2181	0.25	-0.1
1,074,366	+		GFF2181	0.25	-0.2
1,074,366	+		GFF2181	0.25	+0.8
1,074,367	-		GFF2181	0.25	-0.3
1,074,369	+		GFF2181	0.26	-0.3
1,074,370	-		GFF2181	0.26	-0.1
1,074,370	-		GFF2181	0.26	+0.6
1,074,372	+		GFF2181	0.26	+0.7
1,074,372	+		GFF2181	0.26	+0.8
1,074,372	+		GFF2181	0.26	+0.5