Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2126

Experiment: Ying_all64 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 3
1,015,450	+		GFF2125	0.25	+0.8
1,015,450	+		GFF2125	0.25	+0.1
1,015,450	+		GFF2125	0.25	+0.9
1,015,451	-		GFF2125	0.25	-0.0
1,015,451	-		GFF2125	0.25	+0.3
1,015,451	-		GFF2125	0.25	+0.1
1,015,514	+		GFF2125	0.31	+0.6
1,015,514	+		GFF2125	0.31	-0.3
1,015,515	-		GFF2125	0.31	+1.1
1,015,515	-		GFF2125	0.31	-0.6
1,015,515	-		GFF2125	0.31	+0.4
1,015,916	+		GFF2125	0.67	-0.2
1,015,916	+		GFF2125	0.67	+0.1
1,015,916	+		GFF2125	0.67	+0.0
1,015,916	+		GFF2125	0.67	+0.8
1,015,916	+		GFF2125	0.67	+0.4
1,015,916	+		GFF2125	0.67	-0.3
1,015,917	-		GFF2125	0.67	-0.4
1,015,917	-		GFF2125	0.67	+0.6
1,015,917	-		GFF2125	0.67	-0.2
1,015,917	-		GFF2125	0.67	-0.2
1,015,917	-		GFF2125	0.67	-0.1
1,015,956	-		GFF2125	0.71	+2.1
1,015,956	-		GFF2125	0.71	+0.2
1,016,021	+		GFF2125	0.77	-0.5
1,016,021	+		GFF2125	0.77	+1.1
1,016,022	-		GFF2125	0.77	-0.1
1,016,259	-				-0.1
1,016,262	+				-0.2
1,016,398	+				-1.3
1,016,398	+				-0.2
1,016,398	+				+0.1
1,016,399	-				+0.5
1,016,590	+		GFF2126	0.30	-0.0
1,016,591	-		GFF2126	0.31	-0.2
1,016,623	+		GFF2126	0.37	+0.5
1,016,624	-		GFF2126	0.38	-0.2
1,016,647	+		GFF2126	0.42	+0.7
1,016,648	-		GFF2126	0.43	-1.1
1,016,648	-		GFF2126	0.43	+0.2
1,016,648	-		GFF2126	0.43	-0.8
1,016,648	-		GFF2126	0.43	+0.5
1,016,648	-		GFF2126	0.43	-0.4
1,016,662	+		GFF2126	0.46	+0.7
1,016,662	+		GFF2126	0.46	+0.3
1,016,662	+		GFF2126	0.46	-0.1
1,016,693	-		GFF2126	0.52	-0.1
1,016,693	-		GFF2126	0.52	+0.3
1,016,693	-		GFF2126	0.52	+0.2
1,016,693	-		GFF2126	0.52	-1.0
1,016,836	+		GFF2126	0.82	-0.7
1,016,836	+		GFF2126	0.82	+0.1
1,016,837	-		GFF2126	0.82	-0.4
1,017,147	+		GFF2127	0.40	-1.5
1,017,148	-		GFF2127	0.40	-0.1
1,017,402	+		GFF2127	0.81	+0.7
1,017,678	-				+0.4