Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2123

Experiment: Ying_all64 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 3
1,012,981	+		GFF2121	0.84	+0.5
1,013,101	+				-0.5
1,013,101	+				-0.3
1,013,102	-				-0.1
1,013,102	-				-1.2
1,013,102	-				-1.5
1,013,262	+				-0.5
1,013,263	-				+1.4
1,013,263	-				-0.9
1,013,482	+				+2.0
1,013,483	-				-0.2
1,013,483	-				-0.4
1,013,504	+				-0.1
1,013,522	+				-0.2
1,013,522	+				+0.2
1,013,522	+				-0.1
1,013,522	+				+0.5
1,013,522	+				+0.5
1,013,522	+				-0.1
1,013,523	-				-0.4
1,013,523	-				+1.7
1,013,523	-				+0.7
1,013,646	+				+0.2
1,013,646	+				+1.1
1,013,646	+				-0.1
1,013,646	+				+1.0
1,013,646	+				-0.9
1,013,646	+				+0.1
1,013,647	-				+1.1
1,013,647	-				-1.1
1,013,647	-				-0.7
1,013,647	-				-0.5
1,013,647	-				-0.3
1,013,647	-				-0.1
1,013,647	-				-1.6
1,013,647	-				-0.7
1,013,790	+		GFF2122	0.70	+0.2
1,013,790	+		GFF2122	0.70	+0.2
1,013,790	+		GFF2122	0.70	-0.2
1,013,790	+		GFF2122	0.70	+1.9
1,013,790	+		GFF2122	0.70	+0.4
1,013,790	+		GFF2122	0.70	-1.5
1,013,791	-		GFF2122	0.70	-0.4
1,013,791	-		GFF2122	0.70	+0.9
1,013,860	+				-0.5
1,013,860	+				+0.3
1,013,860	+				-0.4
1,013,860	+				-1.4
1,013,861	-				+0.2
1,013,861	-				+0.9
1,013,986	+		GFF2123	0.40	-1.2
1,013,986	+		GFF2123	0.40	-1.8
1,014,062	-		GFF2123	0.70	-1.5
1,014,062	-		GFF2123	0.70	-1.5
1,014,147	+				+0.1
1,014,148	-				-0.5
1,014,148	-				-0.3
1,014,582	+		GFF2124	0.43	+0.1
1,014,582	+		GFF2124	0.43	-0.5
1,014,583	-		GFF2124	0.43	+0.0
1,014,583	-		GFF2124	0.43	-0.2
1,014,597	+		GFF2124	0.44	+1.3
1,014,837	+		GFF2124	0.67	-0.1
1,014,837	+		GFF2124	0.67	+1.7
1,014,837	+		GFF2124	0.67	+0.2
1,014,837	+		GFF2124	0.67	+0.3
1,014,837	+		GFF2124	0.67	+0.4
1,014,837	+		GFF2124	0.67	-1.5
1,014,838	-		GFF2124	0.68	+0.3
1,014,838	-		GFF2124	0.68	-0.3
1,014,838	-		GFF2124	0.68	-0.1
1,014,838	-		GFF2124	0.68	-0.5
1,014,838	-		GFF2124	0.68	-0.3
1,014,838	-		GFF2124	0.68	+0.2
1,014,838	-		GFF2124	0.68	-0.1
1,014,838	-		GFF2124	0.68	+0.7
1,014,838	-		GFF2124	0.68	-1.3
1,014,838	-		GFF2124	0.68	-0.7
1,014,838	-		GFF2124	0.68	-0.5