Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF212

Experiment: Ying_all64 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF211 and GFF212 are separated by 72 nucleotidesGFF212 and GFF213 are separated by 74 nucleotides GFF211 - Fic family protein, at 228,875 to 230,014 GFF211 GFF212 - Nucleoside ABC transporter, periplasmic nucleoside-binding protein, at 230,087 to 231,181 GFF212 GFF213 - Guanine deaminase (EC 3.5.4.3), at 231,256 to 232,536 GFF213 Position (kb) 230 231 232Strain fitness (log2 ratio) -2 -1 0 1 2 3at 229.604 kb on + strand, within GFF211at 229.604 kb on + strand, within GFF211at 229.604 kb on + strand, within GFF211at 229.605 kb on - strand, within GFF211at 229.605 kb on - strand, within GFF211at 229.605 kb on - strand, within GFF211at 229.605 kb on - strand, within GFF211at 229.643 kb on + strand, within GFF211at 229.643 kb on + strand, within GFF211at 229.643 kb on + strand, within GFF211at 229.643 kb on + strand, within GFF211at 229.644 kb on - strand, within GFF211at 229.646 kb on + strand, within GFF211at 229.646 kb on + strand, within GFF211at 229.646 kb on + strand, within GFF211at 229.646 kb on + strand, within GFF211at 229.647 kb on - strand, within GFF211at 229.647 kb on - strand, within GFF211at 229.647 kb on - strand, within GFF211at 229.986 kb on - strandat 229.986 kb on - strandat 229.986 kb on - strandat 230.012 kb on + strandat 230.017 kb on + strandat 230.017 kb on + strandat 230.018 kb on - strandat 230.075 kb on + strandat 230.075 kb on + strandat 230.075 kb on + strandat 230.075 kb on + strandat 230.075 kb on + strandat 230.075 kb on + strandat 230.075 kb on + strandat 230.076 kb on - strandat 230.076 kb on - strandat 230.076 kb on - strandat 230.076 kb on - strandat 230.076 kb on - strandat 230.076 kb on - strandat 230.076 kb on - strandat 230.076 kb on - strandat 230.076 kb on - strandat 230.076 kb on - strandat 230.076 kb on - strandat 230.090 kb on + strandat 230.090 kb on + strandat 230.090 kb on + strandat 230.091 kb on - strandat 230.142 kb on + strandat 230.143 kb on - strandat 230.143 kb on - strandat 230.143 kb on - strandat 230.201 kb on + strand, within GFF212at 230.201 kb on + strand, within GFF212at 230.201 kb on + strand, within GFF212at 230.202 kb on + strand, within GFF212at 230.202 kb on - strand, within GFF212at 230.202 kb on - strand, within GFF212at 230.297 kb on + strand, within GFF212at 230.298 kb on - strand, within GFF212at 230.298 kb on - strand, within GFF212at 230.393 kb on + strand, within GFF212at 230.393 kb on + strand, within GFF212at 230.393 kb on + strand, within GFF212at 230.394 kb on - strand, within GFF212at 230.394 kb on - strand, within GFF212at 230.394 kb on - strand, within GFF212at 230.459 kb on + strand, within GFF212at 230.459 kb on + strand, within GFF212at 230.460 kb on - strand, within GFF212at 230.498 kb on + strand, within GFF212at 230.499 kb on - strand, within GFF212at 230.501 kb on + strand, within GFF212at 230.502 kb on - strand, within GFF212at 230.502 kb on - strand, within GFF212at 230.502 kb on - strand, within GFF212at 230.502 kb on - strand, within GFF212at 230.513 kb on + strand, within GFF212at 230.558 kb on + strand, within GFF212at 230.558 kb on + strand, within GFF212at 230.558 kb on + strand, within GFF212at 230.558 kb on + strand, within GFF212at 230.559 kb on - strand, within GFF212at 230.559 kb on - strand, within GFF212at 230.801 kb on + strand, within GFF212at 230.802 kb on + strand, within GFF212at 230.802 kb on - strand, within GFF212at 230.802 kb on - strand, within GFF212at 230.802 kb on - strand, within GFF212at 230.870 kb on + strand, within GFF212at 230.870 kb on + strand, within GFF212at 230.870 kb on + strand, within GFF212at 230.870 kb on + strand, within GFF212at 230.870 kb on + strand, within GFF212at 230.870 kb on + strand, within GFF212at 230.871 kb on - strand, within GFF212at 230.873 kb on + strand, within GFF212at 230.873 kb on + strand, within GFF212at 230.873 kb on + strand, within GFF212at 230.874 kb on - strand, within GFF212at 230.874 kb on - strand, within GFF212at 230.874 kb on - strand, within GFF212at 230.874 kb on - strand, within GFF212at 231.196 kb on + strandat 231.219 kb on + strandat 231.219 kb on + strandat 231.219 kb on + strandat 231.266 kb on - strandat 231.311 kb on - strandat 231.311 kb on - strandat 231.311 kb on - strandat 231.403 kb on + strand, within GFF213at 231.403 kb on + strand, within GFF213at 231.403 kb on + strand, within GFF213at 231.404 kb on - strand, within GFF213at 231.404 kb on - strand, within GFF213at 231.404 kb on - strand, within GFF213at 231.404 kb on - strand, within GFF213at 231.404 kb on - strand, within GFF213at 231.535 kb on + strand, within GFF213at 231.535 kb on + strand, within GFF213at 231.535 kb on + strand, within GFF213at 231.535 kb on + strand, within GFF213at 231.535 kb on + strand, within GFF213at 231.536 kb on - strand, within GFF213at 231.536 kb on - strand, within GFF213at 231.536 kb on - strand, within GFF213at 231.832 kb on + strand, within GFF213at 231.833 kb on - strand, within GFF213at 231.908 kb on - strand, within GFF213at 231.994 kb on + strand, within GFF213at 231.995 kb on - strand, within GFF213at 232.006 kb on + strand, within GFF213at 232.007 kb on - strand, within GFF213at 232.007 kb on - strand, within GFF213at 232.042 kb on + strand, within GFF213at 232.042 kb on + strand, within GFF213at 232.042 kb on + strand, within GFF213at 232.042 kb on + strand, within GFF213at 232.043 kb on - strand, within GFF213at 232.156 kb on + strand, within GFF213

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3
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229,604 + GFF211 0.64 -0.5
229,604 + GFF211 0.64 -0.1
229,604 + GFF211 0.64 -0.2
229,605 - GFF211 0.64 +0.2
229,605 - GFF211 0.64 +0.1
229,605 - GFF211 0.64 +0.2
229,605 - GFF211 0.64 +0.1
229,643 + GFF211 0.67 -0.3
229,643 + GFF211 0.67 -0.4
229,643 + GFF211 0.67 -0.0
229,643 + GFF211 0.67 -0.2
229,644 - GFF211 0.67 +0.1
229,646 + GFF211 0.68 +0.8
229,646 + GFF211 0.68 +0.7
229,646 + GFF211 0.68 +1.0
229,646 + GFF211 0.68 -0.0
229,647 - GFF211 0.68 -0.6
229,647 - GFF211 0.68 -0.8
229,647 - GFF211 0.68 +1.3
229,986 - +1.0
229,986 - -0.3
229,986 - +3.3
230,012 + +0.0
230,017 + +0.5
230,017 + -0.6
230,018 - +0.6
230,075 + -0.6
230,075 + +1.0
230,075 + -0.5
230,075 + +0.3
230,075 + -0.2
230,075 + +0.7
230,075 + +0.6
230,076 - +0.8
230,076 - +0.5
230,076 - -2.0
230,076 - +1.1
230,076 - -0.6
230,076 - +0.4
230,076 - -0.0
230,076 - +1.6
230,076 - +1.3
230,076 - -0.1
230,076 - -0.6
230,090 + +0.4
230,090 + +0.4
230,090 + +0.4
230,091 - +0.4
230,142 + +1.0
230,143 - +1.6
230,143 - +1.0
230,143 - -0.1
230,201 + GFF212 0.10 -0.7
230,201 + GFF212 0.10 -1.0
230,201 + GFF212 0.10 -1.2
230,202 + GFF212 0.11 +0.8
230,202 - GFF212 0.11 -1.1
230,202 - GFF212 0.11 +0.9
230,297 + GFF212 0.19 +0.0
230,298 - GFF212 0.19 +0.8
230,298 - GFF212 0.19 -0.6
230,393 + GFF212 0.28 -0.4
230,393 + GFF212 0.28 -0.8
230,393 + GFF212 0.28 +1.0
230,394 - GFF212 0.28 +0.2
230,394 - GFF212 0.28 +0.6
230,394 - GFF212 0.28 +1.4
230,459 + GFF212 0.34 +0.1
230,459 + GFF212 0.34 +0.8
230,460 - GFF212 0.34 +0.3
230,498 + GFF212 0.38 +0.4
230,499 - GFF212 0.38 -0.6
230,501 + GFF212 0.38 +0.5
230,502 - GFF212 0.38 -0.0
230,502 - GFF212 0.38 -0.4
230,502 - GFF212 0.38 +0.5
230,502 - GFF212 0.38 +0.6
230,513 + GFF212 0.39 +0.6
230,558 + GFF212 0.43 -1.2
230,558 + GFF212 0.43 +0.6
230,558 + GFF212 0.43 +0.8
230,558 + GFF212 0.43 +0.1
230,559 - GFF212 0.43 +0.0
230,559 - GFF212 0.43 +1.0
230,801 + GFF212 0.65 -0.3
230,802 + GFF212 0.65 +1.0
230,802 - GFF212 0.65 +0.3
230,802 - GFF212 0.65 +1.0
230,802 - GFF212 0.65 +1.0
230,870 + GFF212 0.72 +0.8
230,870 + GFF212 0.72 +0.7
230,870 + GFF212 0.72 -0.1
230,870 + GFF212 0.72 +0.4
230,870 + GFF212 0.72 -0.1
230,870 + GFF212 0.72 -0.0
230,871 - GFF212 0.72 -0.5
230,873 + GFF212 0.72 -1.8
230,873 + GFF212 0.72 +0.2
230,873 + GFF212 0.72 +1.0
230,874 - GFF212 0.72 +0.9
230,874 - GFF212 0.72 +1.0
230,874 - GFF212 0.72 +0.2
230,874 - GFF212 0.72 +0.3
231,196 + -0.3
231,219 + +0.3
231,219 + +0.3
231,219 + -0.1
231,266 - +1.0
231,311 - +0.4
231,311 - +0.2
231,311 - +0.8
231,403 + GFF213 0.11 -0.6
231,403 + GFF213 0.11 +0.1
231,403 + GFF213 0.11 -0.9
231,404 - GFF213 0.12 +0.2
231,404 - GFF213 0.12 +0.4
231,404 - GFF213 0.12 +1.8
231,404 - GFF213 0.12 +0.5
231,404 - GFF213 0.12 +0.7
231,535 + GFF213 0.22 -0.2
231,535 + GFF213 0.22 -0.2
231,535 + GFF213 0.22 -0.8
231,535 + GFF213 0.22 -0.2
231,535 + GFF213 0.22 -0.2
231,536 - GFF213 0.22 +0.4
231,536 - GFF213 0.22 -0.2
231,536 - GFF213 0.22 -0.3
231,832 + GFF213 0.45 -0.5
231,833 - GFF213 0.45 -0.2
231,908 - GFF213 0.51 -0.3
231,994 + GFF213 0.58 +1.1
231,995 - GFF213 0.58 +0.5
232,006 + GFF213 0.59 -0.2
232,007 - GFF213 0.59 -0.3
232,007 - GFF213 0.59 +0.3
232,042 + GFF213 0.61 -1.1
232,042 + GFF213 0.61 -0.1
232,042 + GFF213 0.61 +1.3
232,042 + GFF213 0.61 +1.1
232,043 - GFF213 0.61 +0.4
232,156 + GFF213 0.70 +0.5

Or see this region's nucleotide sequence