Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2111

Experiment: Ying_all64 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 3
999,210	-				+1.2
999,210	-				-0.6
999,278	+				+0.0
999,279	-				+1.5
999,844	+		GFF2110	0.63	+0.0
1,000,558	+		GFF2111	0.51	-0.0
1,000,558	+		GFF2111	0.51	+0.4
1,000,558	+		GFF2111	0.51	+0.5
1,000,559	-		GFF2111	0.51	-0.1
1,000,559	-		GFF2111	0.51	+0.8
1,000,559	-		GFF2111	0.51	+0.1
1,000,559	-		GFF2111	0.51	+0.2
1,001,063	+		GFF2112	0.13	-0.0
1,001,063	+		GFF2112	0.13	+0.0
1,001,063	+		GFF2112	0.13	-0.1