Experiment: Ying_all64 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2055 and GFF2056 are separated by 410 nucleotides GFF2056 and GFF2057 are separated by 37 nucleotides GFF2057 and GFF2058 are separated by 3 nucleotides
GFF2055 - hypothetical protein, at 937,693 to 938,304
GFF2055
GFF2056 - Septum site-determining protein MinC, at 938,715 to 939,488
GFF2056
GFF2057 - Septum site-determining protein MinD, at 939,526 to 940,341
GFF2057
GFF2058 - Cell division topological specificity factor MinE, at 940,345 to 940,605
GFF2058
Position (kb) 938
939
940 Strain fitness (log2 ratio) -2
-1
0
1
2 at 937.824 kb on + strand, within GFF2055 at 938.164 kb on + strand, within GFF2055 at 938.164 kb on + strand, within GFF2055 at 938.164 kb on + strand, within GFF2055 at 938.164 kb on + strand, within GFF2055 at 938.164 kb on + strand, within GFF2055 at 938.165 kb on - strand, within GFF2055 at 938.165 kb on - strand, within GFF2055 at 938.165 kb on - strand, within GFF2055 at 938.165 kb on - strand, within GFF2055 at 938.341 kb on + strand at 938.343 kb on + strand at 938.347 kb on + strand at 938.347 kb on + strand at 938.347 kb on + strand at 938.347 kb on + strand at 938.347 kb on + strand at 938.347 kb on + strand at 938.347 kb on + strand at 938.347 kb on + strand at 938.347 kb on + strand at 938.347 kb on + strand at 938.347 kb on + strand at 938.347 kb on + strand at 938.347 kb on + strand at 938.347 kb on + strand at 938.347 kb on + strand at 938.348 kb on - strand at 938.348 kb on - strand at 938.348 kb on - strand at 938.348 kb on - strand at 938.348 kb on - strand at 938.348 kb on - strand at 938.348 kb on - strand at 938.348 kb on - strand at 938.348 kb on - strand at 938.348 kb on - strand at 938.348 kb on - strand at 938.348 kb on - strand at 938.349 kb on + strand at 938.349 kb on + strand at 938.349 kb on + strand at 938.349 kb on + strand at 938.349 kb on + strand at 938.349 kb on + strand at 938.349 kb on + strand at 938.349 kb on + strand at 938.349 kb on + strand at 938.350 kb on - strand at 938.350 kb on - strand at 938.350 kb on - strand at 938.350 kb on - strand at 938.350 kb on - strand at 938.350 kb on - strand at 938.350 kb on - strand at 938.350 kb on - strand at 938.350 kb on - strand at 938.350 kb on - strand at 938.357 kb on + strand at 938.357 kb on + strand at 938.358 kb on - strand at 938.358 kb on - strand at 938.358 kb on - strand at 938.361 kb on + strand at 938.638 kb on + strand at 938.638 kb on + strand at 938.638 kb on + strand at 938.638 kb on + strand at 938.639 kb on - strand at 938.639 kb on - strand at 938.639 kb on - strand at 938.639 kb on - strand at 938.639 kb on - strand at 939.138 kb on - strand, within GFF2056 at 939.138 kb on - strand, within GFF2056 at 939.138 kb on - strand, within GFF2056 at 939.138 kb on - strand, within GFF2056 at 939.189 kb on + strand, within GFF2056 at 939.189 kb on + strand, within GFF2056 at 939.189 kb on + strand, within GFF2056 at 939.190 kb on - strand, within GFF2056 at 939.270 kb on + strand, within GFF2056 at 939.271 kb on - strand, within GFF2056 at 939.271 kb on - strand, within GFF2056 at 939.271 kb on - strand, within GFF2056 at 939.271 kb on - strand, within GFF2056 at 939.271 kb on - strand, within GFF2056 at 939.271 kb on - strand, within GFF2056 at 939.271 kb on - strand, within GFF2056 at 939.360 kb on + strand, within GFF2056 at 939.375 kb on + strand, within GFF2056 at 939.375 kb on + strand, within GFF2056 at 939.375 kb on + strand, within GFF2056 at 939.376 kb on - strand, within GFF2056 at 939.376 kb on - strand, within GFF2056 at 939.503 kb on - strand at 939.503 kb on - strand at 939.503 kb on - strand at 939.697 kb on + strand, within GFF2057 at 939.697 kb on + strand, within GFF2057 at 939.697 kb on + strand, within GFF2057 at 939.698 kb on - strand, within GFF2057 at 939.698 kb on - strand, within GFF2057 at 939.698 kb on - strand, within GFF2057 at 939.698 kb on - strand, within GFF2057 at 939.871 kb on + strand, within GFF2057 at 939.871 kb on + strand, within GFF2057 at 939.871 kb on + strand, within GFF2057 at 939.871 kb on + strand, within GFF2057 at 939.871 kb on + strand, within GFF2057 at 939.871 kb on + strand, within GFF2057 at 939.871 kb on + strand, within GFF2057 at 939.871 kb on + strand, within GFF2057 at 939.871 kb on + strand, within GFF2057 at 939.872 kb on - strand, within GFF2057 at 939.872 kb on - strand, within GFF2057 at 939.872 kb on - strand, within GFF2057 at 939.872 kb on - strand, within GFF2057 at 939.872 kb on - strand, within GFF2057 at 939.872 kb on - strand, within GFF2057 at 939.872 kb on - strand, within GFF2057 at 939.872 kb on - strand, within GFF2057 at 939.872 kb on - strand, within GFF2057 at 939.928 kb on + strand, within GFF2057 at 939.928 kb on + strand, within GFF2057 at 939.928 kb on + strand, within GFF2057 at 940.072 kb on + strand, within GFF2057 at 940.072 kb on + strand, within GFF2057 at 940.072 kb on + strand, within GFF2057 at 940.073 kb on - strand, within GFF2057 at 940.073 kb on - strand, within GFF2057 at 940.073 kb on - strand, within GFF2057 at 940.073 kb on - strand, within GFF2057 at 940.240 kb on + strand, within GFF2057 at 940.240 kb on + strand, within GFF2057 at 940.240 kb on + strand, within GFF2057 at 940.240 kb on + strand, within GFF2057 at 940.240 kb on + strand, within GFF2057 at 940.240 kb on + strand, within GFF2057 at 940.241 kb on - strand, within GFF2057 at 940.241 kb on - strand, within GFF2057
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3 remove 937,824 + GFF2055 0.21 +0.6 938,164 + GFF2055 0.77 -0.4 938,164 + GFF2055 0.77 +0.2 938,164 + GFF2055 0.77 -0.2 938,164 + GFF2055 0.77 -1.2 938,164 + GFF2055 0.77 -0.6 938,165 - GFF2055 0.77 +0.1 938,165 - GFF2055 0.77 -1.9 938,165 - GFF2055 0.77 +0.1 938,165 - GFF2055 0.77 -0.0 938,341 + -0.5 938,343 + +0.3 938,347 + -0.5 938,347 + -0.3 938,347 + -0.1 938,347 + -0.2 938,347 + -0.2 938,347 + -0.3 938,347 + -0.2 938,347 + +0.8 938,347 + -0.2 938,347 + +0.1 938,347 + +0.7 938,347 + +0.3 938,347 + +0.3 938,347 + +0.3 938,347 + -1.5 938,348 - -0.1 938,348 - -0.0 938,348 - +0.2 938,348 - -0.3 938,348 - +0.1 938,348 - +0.3 938,348 - -0.5 938,348 - -0.2 938,348 - +0.0 938,348 - +1.3 938,348 - +0.2 938,348 - +0.7 938,349 + +0.1 938,349 + -0.2 938,349 + -0.7 938,349 + -0.5 938,349 + -0.1 938,349 + -1.2 938,349 + +0.2 938,349 + -0.6 938,349 + +1.1 938,350 - -0.4 938,350 - -1.0 938,350 - +1.2 938,350 - -1.0 938,350 - +0.3 938,350 - +0.3 938,350 - +0.2 938,350 - -1.1 938,350 - -0.9 938,350 - +0.1 938,357 + +2.4 938,357 + -0.1 938,358 - +0.3 938,358 - +0.1 938,358 - +0.0 938,361 + -2.1 938,638 + +0.7 938,638 + -0.3 938,638 + +0.5 938,638 + -0.1 938,639 - -0.2 938,639 - +0.4 938,639 - +0.3 938,639 - +0.1 938,639 - +1.1 939,138 - GFF2056 0.55 +0.1 939,138 - GFF2056 0.55 -1.1 939,138 - GFF2056 0.55 -0.2 939,138 - GFF2056 0.55 -0.1 939,189 + GFF2056 0.61 +0.4 939,189 + GFF2056 0.61 +2.1 939,189 + GFF2056 0.61 -0.4 939,190 - GFF2056 0.61 -0.5 939,270 + GFF2056 0.72 -1.0 939,271 - GFF2056 0.72 -0.5 939,271 - GFF2056 0.72 -0.5 939,271 - GFF2056 0.72 +0.0 939,271 - GFF2056 0.72 +0.6 939,271 - GFF2056 0.72 +0.2 939,271 - GFF2056 0.72 -1.0 939,271 - GFF2056 0.72 -0.7 939,360 + GFF2056 0.83 -0.2 939,375 + GFF2056 0.85 +0.7 939,375 + GFF2056 0.85 -1.0 939,375 + GFF2056 0.85 -0.7 939,376 - GFF2056 0.85 +0.1 939,376 - GFF2056 0.85 +1.4 939,503 - +0.5 939,503 - -0.5 939,503 - -0.0 939,697 + GFF2057 0.21 +0.0 939,697 + GFF2057 0.21 +0.3 939,697 + GFF2057 0.21 -0.5 939,698 - GFF2057 0.21 +0.3 939,698 - GFF2057 0.21 -0.0 939,698 - GFF2057 0.21 -0.5 939,698 - GFF2057 0.21 -0.4 939,871 + GFF2057 0.42 +0.2 939,871 + GFF2057 0.42 -0.0 939,871 + GFF2057 0.42 +0.4 939,871 + GFF2057 0.42 -0.2 939,871 + GFF2057 0.42 -0.6 939,871 + GFF2057 0.42 -0.3 939,871 + GFF2057 0.42 +0.1 939,871 + GFF2057 0.42 +0.6 939,871 + GFF2057 0.42 -0.0 939,872 - GFF2057 0.42 -1.1 939,872 - GFF2057 0.42 -1.2 939,872 - GFF2057 0.42 -0.4 939,872 - GFF2057 0.42 -0.2 939,872 - GFF2057 0.42 +0.1 939,872 - GFF2057 0.42 -0.3 939,872 - GFF2057 0.42 -0.1 939,872 - GFF2057 0.42 +0.1 939,872 - GFF2057 0.42 -0.2 939,928 + GFF2057 0.49 -0.6 939,928 + GFF2057 0.49 +0.6 939,928 + GFF2057 0.49 -0.7 940,072 + GFF2057 0.67 +0.8 940,072 + GFF2057 0.67 -0.3 940,072 + GFF2057 0.67 -1.2 940,073 - GFF2057 0.67 +0.3 940,073 - GFF2057 0.67 -0.5 940,073 - GFF2057 0.67 +0.1 940,073 - GFF2057 0.67 +0.1 940,240 + GFF2057 0.88 +0.5 940,240 + GFF2057 0.88 -0.1 940,240 + GFF2057 0.88 -0.6 940,240 + GFF2057 0.88 +0.5 940,240 + GFF2057 0.88 -0.2 940,240 + GFF2057 0.88 -0.9 940,241 - GFF2057 0.88 -0.2 940,241 - GFF2057 0.88 -0.5
Or see this region's nucleotide sequence