Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2055

Experiment: Ying_all64 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 3
936,745	-				-0.7
936,750	+				+0.1
936,751	-				+0.8
936,751	-				-0.4
936,781	+				-1.8
936,781	+				-0.9
936,781	+				-1.7
937,052	+				-0.4
937,052	+				+1.1
937,052	+				-0.1
937,053	-				+0.5
937,179	-		GFF2054	0.19	+0.1
937,179	-		GFF2054	0.19	-0.3
937,209	+		GFF2054	0.24	+0.3
937,209	+		GFF2054	0.24	-0.5
937,210	-		GFF2054	0.25	-0.2
937,257	+		GFF2054	0.33	+0.0
937,258	-		GFF2054	0.33	+1.4
937,266	+		GFF2054	0.35	+0.1
937,266	+		GFF2054	0.35	-0.3
937,824	+		GFF2055	0.21	+0.6
938,164	+		GFF2055	0.77	-0.4
938,164	+		GFF2055	0.77	+0.2
938,164	+		GFF2055	0.77	-0.2
938,164	+		GFF2055	0.77	-1.2
938,164	+		GFF2055	0.77	-0.6
938,165	-		GFF2055	0.77	+0.1
938,165	-		GFF2055	0.77	-1.9
938,165	-		GFF2055	0.77	+0.1
938,165	-		GFF2055	0.77	-0.0
938,341	+				-0.5
938,343	+				+0.3
938,347	+				-0.5
938,347	+				-0.3
938,347	+				-0.1
938,347	+				-0.2
938,347	+				-0.2
938,347	+				-0.3
938,347	+				-0.2
938,347	+				+0.8
938,347	+				-0.2
938,347	+				+0.1
938,347	+				+0.7
938,347	+				+0.3
938,347	+				+0.3
938,347	+				+0.3
938,347	+				-1.5
938,348	-				-0.1
938,348	-				-0.0
938,348	-				+0.2
938,348	-				-0.3
938,348	-				+0.1
938,348	-				+0.3
938,348	-				-0.5
938,348	-				-0.2
938,348	-				+0.0
938,348	-				+1.3
938,348	-				+0.2
938,348	-				+0.7
938,349	+				+0.1
938,349	+				-0.2
938,349	+				-0.7
938,349	+				-0.5
938,349	+				-0.1
938,349	+				-1.2
938,349	+				+0.2
938,349	+				-0.6
938,349	+				+1.1
938,350	-				-0.4
938,350	-				-1.0
938,350	-				+1.2
938,350	-				-1.0
938,350	-				+0.3
938,350	-				+0.3
938,350	-				+0.2
938,350	-				-1.1
938,350	-				-0.9
938,350	-				+0.1
938,357	+				+2.4
938,357	+				-0.1
938,358	-				+0.3
938,358	-				+0.1
938,358	-				+0.0
938,361	+				-2.1
938,638	+				+0.7
938,638	+				-0.3
938,638	+				+0.5
938,638	+				-0.1
938,639	-				-0.2
938,639	-				+0.4
938,639	-				+0.3
938,639	-				+0.1
938,639	-				+1.1
939,138	-		GFF2056	0.55	+0.1
939,138	-		GFF2056	0.55	-1.1
939,138	-		GFF2056	0.55	-0.2
939,138	-		GFF2056	0.55	-0.1
939,189	+		GFF2056	0.61	+0.4
939,189	+		GFF2056	0.61	+2.1
939,189	+		GFF2056	0.61	-0.4
939,190	-		GFF2056	0.61	-0.5
939,270	+		GFF2056	0.72	-1.0
939,271	-		GFF2056	0.72	-0.5
939,271	-		GFF2056	0.72	-0.5
939,271	-		GFF2056	0.72	+0.0
939,271	-		GFF2056	0.72	+0.6
939,271	-		GFF2056	0.72	+0.2
939,271	-		GFF2056	0.72	-1.0
939,271	-		GFF2056	0.72	-0.7