Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2037

Experiment: Ying_all64 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2036 and GFF2037 are separated by 13 nucleotidesGFF2037 and GFF2038 are separated by 61 nucleotidesGFF2038 and GFF2039 are separated by 21 nucleotides GFF2036 - Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18), at 916,808 to 918,247 GFF2036 GFF2037 - glutamine synthetase family protein, at 918,261 to 919,628 GFF2037 GFF2038 - Gamma-glutamyl-GABA hydrolase (EC 3.5.1.94), at 919,690 to 920,499 GFF2038 GFF2039 - hypothetical protein, at 920,521 to 920,685 GFF2039 Position (kb) 918 919 920Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 917.310 kb on + strand, within GFF2036at 917.310 kb on + strand, within GFF2036at 917.310 kb on + strand, within GFF2036at 917.310 kb on + strand, within GFF2036at 917.311 kb on - strand, within GFF2036at 917.311 kb on - strand, within GFF2036at 917.311 kb on - strand, within GFF2036at 917.311 kb on - strand, within GFF2036at 917.370 kb on + strand, within GFF2036at 917.371 kb on - strand, within GFF2036at 917.469 kb on + strand, within GFF2036at 917.469 kb on + strand, within GFF2036at 917.469 kb on + strand, within GFF2036at 917.470 kb on - strand, within GFF2036at 917.470 kb on - strand, within GFF2036at 917.470 kb on - strand, within GFF2036at 917.736 kb on + strand, within GFF2036at 917.737 kb on - strand, within GFF2036at 917.737 kb on - strand, within GFF2036at 917.737 kb on - strand, within GFF2036at 917.737 kb on - strand, within GFF2036at 917.793 kb on + strand, within GFF2036at 917.793 kb on + strand, within GFF2036at 917.862 kb on - strand, within GFF2036at 917.952 kb on + strand, within GFF2036at 917.953 kb on - strand, within GFF2036at 917.980 kb on - strand, within GFF2036at 918.078 kb on + strand, within GFF2036at 918.078 kb on + strand, within GFF2036at 918.078 kb on + strand, within GFF2036at 918.078 kb on + strand, within GFF2036at 918.078 kb on + strand, within GFF2036at 918.078 kb on + strand, within GFF2036at 918.078 kb on + strand, within GFF2036at 918.078 kb on + strand, within GFF2036at 918.078 kb on + strand, within GFF2036at 918.079 kb on - strand, within GFF2036at 918.079 kb on - strand, within GFF2036at 918.079 kb on - strand, within GFF2036at 918.079 kb on - strand, within GFF2036at 918.079 kb on - strand, within GFF2036at 918.079 kb on - strand, within GFF2036at 918.079 kb on - strand, within GFF2036at 918.302 kb on + strandat 918.346 kb on + strandat 918.346 kb on + strandat 918.346 kb on + strandat 918.346 kb on + strandat 918.346 kb on + strandat 918.347 kb on - strandat 918.439 kb on + strand, within GFF2037at 918.439 kb on + strand, within GFF2037at 918.440 kb on - strand, within GFF2037at 918.440 kb on - strand, within GFF2037at 918.451 kb on + strand, within GFF2037at 918.452 kb on - strand, within GFF2037at 918.452 kb on - strand, within GFF2037at 918.505 kb on + strand, within GFF2037at 918.505 kb on + strand, within GFF2037at 918.506 kb on - strand, within GFF2037at 918.538 kb on + strand, within GFF2037at 918.538 kb on + strand, within GFF2037at 918.538 kb on + strand, within GFF2037at 918.538 kb on + strand, within GFF2037at 918.538 kb on + strand, within GFF2037at 918.539 kb on - strand, within GFF2037at 918.539 kb on - strand, within GFF2037at 918.539 kb on - strand, within GFF2037at 918.682 kb on + strand, within GFF2037at 918.682 kb on + strand, within GFF2037at 918.682 kb on + strand, within GFF2037at 918.683 kb on - strand, within GFF2037at 918.683 kb on - strand, within GFF2037at 918.683 kb on - strand, within GFF2037at 918.683 kb on - strand, within GFF2037at 918.694 kb on + strand, within GFF2037at 918.694 kb on + strand, within GFF2037at 918.695 kb on - strand, within GFF2037at 918.727 kb on + strand, within GFF2037at 918.727 kb on + strand, within GFF2037at 918.727 kb on + strand, within GFF2037at 918.728 kb on - strand, within GFF2037at 918.728 kb on - strand, within GFF2037at 918.728 kb on - strand, within GFF2037at 918.748 kb on + strand, within GFF2037at 918.748 kb on + strand, within GFF2037at 918.748 kb on + strand, within GFF2037at 918.749 kb on - strand, within GFF2037at 918.754 kb on + strand, within GFF2037at 918.754 kb on + strand, within GFF2037at 918.754 kb on + strand, within GFF2037at 918.754 kb on + strand, within GFF2037at 918.755 kb on - strand, within GFF2037at 918.755 kb on - strand, within GFF2037at 918.886 kb on + strand, within GFF2037at 918.886 kb on + strand, within GFF2037at 918.886 kb on + strand, within GFF2037at 918.886 kb on + strand, within GFF2037at 918.886 kb on + strand, within GFF2037at 918.886 kb on + strand, within GFF2037at 918.886 kb on + strand, within GFF2037at 918.886 kb on + strand, within GFF2037at 918.886 kb on + strand, within GFF2037at 918.886 kb on + strand, within GFF2037at 918.886 kb on + strand, within GFF2037at 918.887 kb on - strand, within GFF2037at 918.887 kb on - strand, within GFF2037at 918.887 kb on - strand, within GFF2037at 918.887 kb on - strand, within GFF2037at 918.887 kb on - strand, within GFF2037at 918.887 kb on - strand, within GFF2037at 918.887 kb on - strand, within GFF2037at 918.887 kb on - strand, within GFF2037at 918.887 kb on - strand, within GFF2037at 918.887 kb on - strand, within GFF2037at 918.887 kb on - strand, within GFF2037at 918.887 kb on - strand, within GFF2037at 919.045 kb on + strand, within GFF2037at 919.046 kb on - strand, within GFF2037at 919.051 kb on + strand, within GFF2037at 919.051 kb on + strand, within GFF2037at 919.051 kb on + strand, within GFF2037at 919.051 kb on + strand, within GFF2037at 919.052 kb on - strand, within GFF2037at 919.052 kb on - strand, within GFF2037at 919.052 kb on - strand, within GFF2037at 919.099 kb on + strand, within GFF2037at 919.100 kb on - strand, within GFF2037at 919.186 kb on + strand, within GFF2037at 919.186 kb on + strand, within GFF2037at 919.186 kb on + strand, within GFF2037at 919.186 kb on + strand, within GFF2037at 919.186 kb on + strand, within GFF2037at 919.186 kb on + strand, within GFF2037at 919.187 kb on - strand, within GFF2037at 919.187 kb on - strand, within GFF2037at 919.187 kb on - strand, within GFF2037at 919.187 kb on - strand, within GFF2037at 919.187 kb on - strand, within GFF2037at 919.187 kb on - strand, within GFF2037at 919.411 kb on + strand, within GFF2037at 919.411 kb on + strand, within GFF2037at 919.411 kb on + strand, within GFF2037at 919.411 kb on + strand, within GFF2037at 919.411 kb on + strand, within GFF2037at 919.412 kb on - strand, within GFF2037at 919.412 kb on - strand, within GFF2037at 919.412 kb on - strand, within GFF2037at 919.412 kb on - strand, within GFF2037at 919.412 kb on - strand, within GFF2037at 919.642 kb on + strandat 919.642 kb on + strandat 919.642 kb on + strandat 919.642 kb on + strandat 919.643 kb on - strandat 919.794 kb on - strand, within GFF2038at 920.033 kb on + strand, within GFF2038at 920.403 kb on - strand, within GFF2038at 920.403 kb on - strand, within GFF2038at 920.403 kb on - strand, within GFF2038at 920.571 kb on + strand, within GFF2039at 920.571 kb on + strand, within GFF2039at 920.571 kb on + strand, within GFF2039at 920.572 kb on - strand, within GFF2039at 920.572 kb on - strand, within GFF2039at 920.572 kb on - strand, within GFF2039

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3
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917,310 + GFF2036 0.35 -2.5
917,310 + GFF2036 0.35 -1.9
917,310 + GFF2036 0.35 -2.4
917,310 + GFF2036 0.35 -2.3
917,311 - GFF2036 0.35 -2.3
917,311 - GFF2036 0.35 -1.8
917,311 - GFF2036 0.35 -2.0
917,311 - GFF2036 0.35 -2.0
917,370 + GFF2036 0.39 -2.5
917,371 - GFF2036 0.39 -0.2
917,469 + GFF2036 0.46 +1.1
917,469 + GFF2036 0.46 -1.5
917,469 + GFF2036 0.46 -2.2
917,470 - GFF2036 0.46 -1.5
917,470 - GFF2036 0.46 -1.4
917,470 - GFF2036 0.46 +0.3
917,736 + GFF2036 0.64 -3.2
917,737 - GFF2036 0.65 -1.4
917,737 - GFF2036 0.65 -3.0
917,737 - GFF2036 0.65 +0.1
917,737 - GFF2036 0.65 -1.3
917,793 + GFF2036 0.68 -2.3
917,793 + GFF2036 0.68 -3.3
917,862 - GFF2036 0.73 -1.8
917,952 + GFF2036 0.79 -2.1
917,953 - GFF2036 0.80 -1.6
917,980 - GFF2036 0.81 -2.1
918,078 + GFF2036 0.88 -2.0
918,078 + GFF2036 0.88 -2.3
918,078 + GFF2036 0.88 -1.7
918,078 + GFF2036 0.88 -2.4
918,078 + GFF2036 0.88 -3.9
918,078 + GFF2036 0.88 -1.8
918,078 + GFF2036 0.88 -3.6
918,078 + GFF2036 0.88 -1.8
918,078 + GFF2036 0.88 -0.5
918,079 - GFF2036 0.88 -1.0
918,079 - GFF2036 0.88 -1.0
918,079 - GFF2036 0.88 -1.8
918,079 - GFF2036 0.88 -1.5
918,079 - GFF2036 0.88 -0.5
918,079 - GFF2036 0.88 -0.5
918,079 - GFF2036 0.88 -2.1
918,302 + -0.9
918,346 + -2.7
918,346 + -1.7
918,346 + -0.9
918,346 + -1.7
918,346 + -0.5
918,347 - +0.1
918,439 + GFF2037 0.13 -1.6
918,439 + GFF2037 0.13 -0.5
918,440 - GFF2037 0.13 +0.2
918,440 - GFF2037 0.13 -0.7
918,451 + GFF2037 0.14 -1.5
918,452 - GFF2037 0.14 -0.7
918,452 - GFF2037 0.14 -0.7
918,505 + GFF2037 0.18 -1.3
918,505 + GFF2037 0.18 -0.5
918,506 - GFF2037 0.18 -0.3
918,538 + GFF2037 0.20 -1.6
918,538 + GFF2037 0.20 -1.6
918,538 + GFF2037 0.20 -0.8
918,538 + GFF2037 0.20 -1.1
918,538 + GFF2037 0.20 -1.3
918,539 - GFF2037 0.20 -1.0
918,539 - GFF2037 0.20 -0.9
918,539 - GFF2037 0.20 -0.5
918,682 + GFF2037 0.31 +0.5
918,682 + GFF2037 0.31 -1.1
918,682 + GFF2037 0.31 -1.0
918,683 - GFF2037 0.31 -0.1
918,683 - GFF2037 0.31 +0.1
918,683 - GFF2037 0.31 -0.1
918,683 - GFF2037 0.31 +0.2
918,694 + GFF2037 0.32 -1.5
918,694 + GFF2037 0.32 -1.7
918,695 - GFF2037 0.32 +0.1
918,727 + GFF2037 0.34 -1.3
918,727 + GFF2037 0.34 -0.7
918,727 + GFF2037 0.34 -0.9
918,728 - GFF2037 0.34 -0.3
918,728 - GFF2037 0.34 -0.5
918,728 - GFF2037 0.34 -1.5
918,748 + GFF2037 0.36 -0.5
918,748 + GFF2037 0.36 -0.2
918,748 + GFF2037 0.36 -1.3
918,749 - GFF2037 0.36 -0.5
918,754 + GFF2037 0.36 -0.9
918,754 + GFF2037 0.36 +0.2
918,754 + GFF2037 0.36 -0.3
918,754 + GFF2037 0.36 -0.3
918,755 - GFF2037 0.36 -1.9
918,755 - GFF2037 0.36 -1.0
918,886 + GFF2037 0.46 -1.5
918,886 + GFF2037 0.46 -0.2
918,886 + GFF2037 0.46 -1.3
918,886 + GFF2037 0.46 -0.5
918,886 + GFF2037 0.46 -2.0
918,886 + GFF2037 0.46 -3.5
918,886 + GFF2037 0.46 -1.1
918,886 + GFF2037 0.46 -1.8
918,886 + GFF2037 0.46 -1.9
918,886 + GFF2037 0.46 -1.1
918,886 + GFF2037 0.46 +0.4
918,887 - GFF2037 0.46 -1.1
918,887 - GFF2037 0.46 -0.9
918,887 - GFF2037 0.46 -0.8
918,887 - GFF2037 0.46 -1.3
918,887 - GFF2037 0.46 -1.2
918,887 - GFF2037 0.46 -1.3
918,887 - GFF2037 0.46 -1.8
918,887 - GFF2037 0.46 -0.5
918,887 - GFF2037 0.46 -0.6
918,887 - GFF2037 0.46 -0.7
918,887 - GFF2037 0.46 -1.4
918,887 - GFF2037 0.46 +0.3
919,045 + GFF2037 0.57 -1.6
919,046 - GFF2037 0.57 -0.6
919,051 + GFF2037 0.58 -1.3
919,051 + GFF2037 0.58 +0.3
919,051 + GFF2037 0.58 -1.5
919,051 + GFF2037 0.58 -1.2
919,052 - GFF2037 0.58 -1.1
919,052 - GFF2037 0.58 -0.2
919,052 - GFF2037 0.58 -1.0
919,099 + GFF2037 0.61 -0.6
919,100 - GFF2037 0.61 -1.2
919,186 + GFF2037 0.68 -0.7
919,186 + GFF2037 0.68 -0.8
919,186 + GFF2037 0.68 -2.7
919,186 + GFF2037 0.68 -1.3
919,186 + GFF2037 0.68 -1.3
919,186 + GFF2037 0.68 -1.3
919,187 - GFF2037 0.68 -1.7
919,187 - GFF2037 0.68 +0.3
919,187 - GFF2037 0.68 +0.7
919,187 - GFF2037 0.68 -0.9
919,187 - GFF2037 0.68 -1.1
919,187 - GFF2037 0.68 -1.0
919,411 + GFF2037 0.84 -3.0
919,411 + GFF2037 0.84 -0.3
919,411 + GFF2037 0.84 +1.1
919,411 + GFF2037 0.84 -1.0
919,411 + GFF2037 0.84 +0.2
919,412 - GFF2037 0.84 -0.6
919,412 - GFF2037 0.84 +0.1
919,412 - GFF2037 0.84 +0.1
919,412 - GFF2037 0.84 -0.8
919,412 - GFF2037 0.84 -1.0
919,642 + -1.4
919,642 + -1.3
919,642 + -0.7
919,642 + -1.3
919,643 - -0.6
919,794 - GFF2038 0.13 +4.7
920,033 + GFF2038 0.42 -1.3
920,403 - GFF2038 0.88 -0.9
920,403 - GFF2038 0.88 -1.4
920,403 - GFF2038 0.88 +2.3
920,571 + GFF2039 0.30 -0.6
920,571 + GFF2039 0.30 +0.7
920,571 + GFF2039 0.30 +1.3
920,572 - GFF2039 0.31 -0.1
920,572 - GFF2039 0.31 -0.5
920,572 - GFF2039 0.31 +0.1

Or see this region's nucleotide sequence