Experiment: Ying_all64 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2016 and GFF2017 are separated by 61 nucleotides GFF2017 and GFF2018 overlap by 4 nucleotides GFF2018 and GFF2019 are separated by 103 nucleotides GFF2019 and GFF2020 are separated by 10 nucleotides
GFF2016 - Threonine efflux protein, at 891,477 to 892,091
GFF2016
GFF2017 - rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB, at 892,153 to 892,827
GFF2017
GFF2018 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA, at 892,824 to 894,791
GFF2018
GFF2019 - NADPH:quinone oxidoreductase, at 894,895 to 895,515
GFF2019
GFF2020 - hypothetical protein, at 895,526 to 896,221
GFF2020
Position (kb) 892
893
894
895 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 891.845 kb on - strand, within GFF2016 at 891.845 kb on - strand, within GFF2016 at 891.845 kb on - strand, within GFF2016 at 891.845 kb on - strand, within GFF2016 at 891.845 kb on - strand, within GFF2016 at 891.845 kb on - strand, within GFF2016 at 892.073 kb on - strand at 892.073 kb on - strand at 892.073 kb on - strand at 892.123 kb on + strand at 892.258 kb on - strand, within GFF2017 at 892.397 kb on + strand, within GFF2017 at 892.397 kb on + strand, within GFF2017 at 892.397 kb on + strand, within GFF2017 at 892.398 kb on - strand, within GFF2017 at 892.398 kb on - strand, within GFF2017 at 892.398 kb on - strand, within GFF2017 at 892.706 kb on + strand, within GFF2017 at 892.706 kb on + strand, within GFF2017 at 892.706 kb on + strand, within GFF2017 at 892.706 kb on + strand, within GFF2017 at 892.707 kb on - strand, within GFF2017 at 892.707 kb on - strand, within GFF2017 at 892.707 kb on - strand, within GFF2017 at 892.707 kb on - strand, within GFF2017 at 892.707 kb on - strand, within GFF2017 at 892.707 kb on - strand, within GFF2017 at 892.707 kb on - strand, within GFF2017 at 892.707 kb on - strand, within GFF2017 at 892.739 kb on + strand, within GFF2017 at 892.739 kb on + strand, within GFF2017 at 892.739 kb on + strand, within GFF2017 at 892.739 kb on + strand, within GFF2017 at 892.739 kb on + strand, within GFF2017 at 892.739 kb on + strand, within GFF2017 at 892.740 kb on - strand, within GFF2017 at 892.740 kb on - strand, within GFF2017 at 892.740 kb on - strand, within GFF2017 at 892.740 kb on - strand, within GFF2017 at 893.008 kb on + strand at 893.009 kb on - strand at 893.041 kb on + strand, within GFF2018 at 893.083 kb on + strand, within GFF2018 at 893.084 kb on - strand, within GFF2018 at 893.084 kb on - strand, within GFF2018 at 893.084 kb on - strand, within GFF2018 at 893.092 kb on + strand, within GFF2018 at 893.093 kb on - strand, within GFF2018 at 893.093 kb on - strand, within GFF2018 at 893.173 kb on + strand, within GFF2018 at 893.173 kb on + strand, within GFF2018 at 893.174 kb on - strand, within GFF2018 at 893.174 kb on - strand, within GFF2018 at 893.206 kb on + strand, within GFF2018 at 893.206 kb on + strand, within GFF2018 at 893.206 kb on + strand, within GFF2018 at 893.207 kb on - strand, within GFF2018 at 893.207 kb on - strand, within GFF2018 at 893.207 kb on - strand, within GFF2018 at 893.540 kb on - strand, within GFF2018 at 893.540 kb on - strand, within GFF2018 at 893.540 kb on - strand, within GFF2018 at 893.540 kb on - strand, within GFF2018 at 893.540 kb on - strand, within GFF2018 at 893.560 kb on - strand, within GFF2018 at 893.635 kb on + strand, within GFF2018 at 893.725 kb on + strand, within GFF2018 at 893.725 kb on + strand, within GFF2018 at 893.725 kb on + strand, within GFF2018 at 893.726 kb on - strand, within GFF2018 at 893.731 kb on + strand, within GFF2018 at 893.732 kb on - strand, within GFF2018 at 893.732 kb on - strand, within GFF2018 at 893.743 kb on + strand, within GFF2018 at 893.744 kb on - strand, within GFF2018 at 893.939 kb on - strand, within GFF2018 at 893.939 kb on - strand, within GFF2018 at 894.158 kb on - strand, within GFF2018 at 894.158 kb on - strand, within GFF2018 at 894.284 kb on - strand, within GFF2018 at 894.481 kb on + strand, within GFF2018 at 894.481 kb on + strand, within GFF2018 at 894.481 kb on + strand, within GFF2018 at 894.481 kb on + strand, within GFF2018 at 894.482 kb on - strand, within GFF2018 at 894.482 kb on - strand, within GFF2018 at 894.784 kb on + strand at 894.784 kb on + strand at 894.785 kb on - strand at 894.785 kb on - strand at 895.078 kb on + strand, within GFF2019 at 895.078 kb on + strand, within GFF2019 at 895.078 kb on + strand, within GFF2019 at 895.078 kb on + strand, within GFF2019 at 895.078 kb on + strand, within GFF2019 at 895.078 kb on + strand, within GFF2019 at 895.079 kb on - strand, within GFF2019 at 895.079 kb on - strand, within GFF2019 at 895.079 kb on - strand, within GFF2019 at 895.177 kb on + strand, within GFF2019 at 895.177 kb on + strand, within GFF2019 at 895.178 kb on - strand, within GFF2019 at 895.178 kb on - strand, within GFF2019 at 895.178 kb on - strand, within GFF2019 at 895.178 kb on - strand, within GFF2019 at 895.189 kb on + strand, within GFF2019 at 895.190 kb on - strand, within GFF2019 at 895.190 kb on - strand, within GFF2019 at 895.190 kb on - strand, within GFF2019 at 895.190 kb on - strand, within GFF2019 at 895.190 kb on - strand, within GFF2019 at 895.190 kb on - strand, within GFF2019 at 895.190 kb on - strand, within GFF2019 at 895.190 kb on - strand, within GFF2019 at 895.190 kb on - strand, within GFF2019 at 895.190 kb on - strand, within GFF2019 at 895.346 kb on + strand, within GFF2019 at 895.346 kb on + strand, within GFF2019 at 895.346 kb on + strand, within GFF2019 at 895.346 kb on + strand, within GFF2019 at 895.346 kb on + strand, within GFF2019 at 895.346 kb on + strand, within GFF2019 at 895.346 kb on + strand, within GFF2019 at 895.346 kb on + strand, within GFF2019 at 895.346 kb on + strand, within GFF2019 at 895.346 kb on + strand, within GFF2019 at 895.347 kb on - strand, within GFF2019 at 895.347 kb on - strand, within GFF2019 at 895.347 kb on - strand, within GFF2019 at 895.347 kb on - strand, within GFF2019 at 895.347 kb on - strand, within GFF2019 at 895.347 kb on - strand, within GFF2019 at 895.347 kb on - strand, within GFF2019 at 895.347 kb on - strand, within GFF2019 at 895.347 kb on - strand, within GFF2019 at 895.347 kb on - strand, within GFF2019 at 895.358 kb on + strand, within GFF2019 at 895.359 kb on - strand, within GFF2019 at 895.359 kb on - strand, within GFF2019 at 895.359 kb on - strand, within GFF2019 at 895.359 kb on - strand, within GFF2019 at 895.516 kb on + strand at 895.516 kb on + strand at 895.516 kb on + strand at 895.516 kb on + strand at 895.516 kb on + strand at 895.516 kb on + strand at 895.516 kb on + strand at 895.517 kb on - strand at 895.517 kb on - strand at 895.517 kb on - strand at 895.517 kb on - strand at 895.517 kb on - strand at 895.517 kb on - strand at 895.517 kb on - strand at 895.517 kb on - strand at 895.517 kb on - strand at 895.517 kb on - strand at 895.533 kb on + strand at 895.533 kb on + strand at 895.533 kb on + strand at 895.533 kb on + strand at 895.533 kb on + strand at 895.533 kb on + strand at 895.533 kb on + strand at 895.534 kb on - strand at 895.534 kb on - strand at 895.534 kb on - strand at 895.534 kb on - strand at 895.686 kb on + strand, within GFF2020 at 895.686 kb on + strand, within GFF2020 at 895.686 kb on + strand, within GFF2020 at 895.686 kb on + strand, within GFF2020 at 895.686 kb on + strand, within GFF2020 at 895.686 kb on + strand, within GFF2020 at 895.687 kb on - strand, within GFF2020 at 895.687 kb on - strand, within GFF2020 at 895.687 kb on - strand, within GFF2020 at 895.687 kb on - strand, within GFF2020 at 895.687 kb on - strand, within GFF2020 at 895.687 kb on - strand, within GFF2020 at 895.687 kb on - strand, within GFF2020 at 895.687 kb on - strand, within GFF2020 at 895.743 kb on + strand, within GFF2020 at 895.743 kb on + strand, within GFF2020 at 895.743 kb on + strand, within GFF2020 at 895.744 kb on - strand, within GFF2020 at 895.744 kb on - strand, within GFF2020 at 895.744 kb on - strand, within GFF2020 at 895.744 kb on - strand, within GFF2020 at 895.744 kb on - strand, within GFF2020 at 895.744 kb on - strand, within GFF2020 at 895.744 kb on - strand, within GFF2020 at 895.744 kb on - strand, within GFF2020 at 895.744 kb on - strand, within GFF2020 at 895.744 kb on - strand, within GFF2020 at 895.744 kb on - strand, within GFF2020 at 895.744 kb on - strand, within GFF2020 at 895.744 kb on - strand, within GFF2020 at 895.744 kb on - strand, within GFF2020 at 895.744 kb on - strand, within GFF2020 at 895.744 kb on - strand, within GFF2020 at 895.744 kb on - strand, within GFF2020 at 895.768 kb on - strand, within GFF2020
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3 remove 891,845 - GFF2016 0.60 +0.1 891,845 - GFF2016 0.60 -1.1 891,845 - GFF2016 0.60 -2.0 891,845 - GFF2016 0.60 -1.3 891,845 - GFF2016 0.60 -0.7 891,845 - GFF2016 0.60 +0.4 892,073 - -1.2 892,073 - -1.6 892,073 - -1.0 892,123 + +0.0 892,258 - GFF2017 0.16 -0.2 892,397 + GFF2017 0.36 -0.4 892,397 + GFF2017 0.36 -0.3 892,397 + GFF2017 0.36 -0.0 892,398 - GFF2017 0.36 +0.3 892,398 - GFF2017 0.36 -0.4 892,398 - GFF2017 0.36 -0.8 892,706 + GFF2017 0.82 -0.7 892,706 + GFF2017 0.82 +0.8 892,706 + GFF2017 0.82 +0.2 892,706 + GFF2017 0.82 +1.1 892,707 - GFF2017 0.82 -0.3 892,707 - GFF2017 0.82 -0.6 892,707 - GFF2017 0.82 -0.4 892,707 - GFF2017 0.82 +0.1 892,707 - GFF2017 0.82 +0.5 892,707 - GFF2017 0.82 -0.3 892,707 - GFF2017 0.82 -0.3 892,707 - GFF2017 0.82 +1.1 892,739 + GFF2017 0.87 +0.1 892,739 + GFF2017 0.87 -0.4 892,739 + GFF2017 0.87 -0.2 892,739 + GFF2017 0.87 -1.0 892,739 + GFF2017 0.87 -0.7 892,739 + GFF2017 0.87 -0.2 892,740 - GFF2017 0.87 +0.2 892,740 - GFF2017 0.87 +0.4 892,740 - GFF2017 0.87 -0.6 892,740 - GFF2017 0.87 -0.8 893,008 + -2.2 893,009 - -0.9 893,041 + GFF2018 0.11 -1.2 893,083 + GFF2018 0.13 -1.6 893,084 - GFF2018 0.13 -1.5 893,084 - GFF2018 0.13 -0.9 893,084 - GFF2018 0.13 -0.5 893,092 + GFF2018 0.14 -1.8 893,093 - GFF2018 0.14 -1.5 893,093 - GFF2018 0.14 -3.1 893,173 + GFF2018 0.18 -0.5 893,173 + GFF2018 0.18 -3.6 893,174 - GFF2018 0.18 -1.9 893,174 - GFF2018 0.18 -1.7 893,206 + GFF2018 0.19 -1.5 893,206 + GFF2018 0.19 -3.4 893,206 + GFF2018 0.19 -1.2 893,207 - GFF2018 0.19 -1.4 893,207 - GFF2018 0.19 -1.7 893,207 - GFF2018 0.19 -1.5 893,540 - GFF2018 0.36 -1.5 893,540 - GFF2018 0.36 -0.7 893,540 - GFF2018 0.36 -2.7 893,540 - GFF2018 0.36 -1.7 893,540 - GFF2018 0.36 -1.9 893,560 - GFF2018 0.37 -3.2 893,635 + GFF2018 0.41 -1.3 893,725 + GFF2018 0.46 -1.1 893,725 + GFF2018 0.46 -2.0 893,725 + GFF2018 0.46 -1.5 893,726 - GFF2018 0.46 -0.9 893,731 + GFF2018 0.46 -0.2 893,732 - GFF2018 0.46 -1.4 893,732 - GFF2018 0.46 +0.1 893,743 + GFF2018 0.47 -0.5 893,744 - GFF2018 0.47 +1.1 893,939 - GFF2018 0.57 -2.6 893,939 - GFF2018 0.57 -0.2 894,158 - GFF2018 0.68 -1.2 894,158 - GFF2018 0.68 -2.5 894,284 - GFF2018 0.74 +0.1 894,481 + GFF2018 0.84 -0.9 894,481 + GFF2018 0.84 -1.2 894,481 + GFF2018 0.84 -1.7 894,481 + GFF2018 0.84 -2.3 894,482 - GFF2018 0.84 -2.2 894,482 - GFF2018 0.84 -1.0 894,784 + -1.6 894,784 + -1.9 894,785 - +0.1 894,785 - -3.1 895,078 + GFF2019 0.29 -0.6 895,078 + GFF2019 0.29 +1.9 895,078 + GFF2019 0.29 +0.1 895,078 + GFF2019 0.29 -0.8 895,078 + GFF2019 0.29 -1.2 895,078 + GFF2019 0.29 +0.7 895,079 - GFF2019 0.30 -1.2 895,079 - GFF2019 0.30 -0.4 895,079 - GFF2019 0.30 +0.1 895,177 + GFF2019 0.45 +0.2 895,177 + GFF2019 0.45 -1.2 895,178 - GFF2019 0.46 -0.4 895,178 - GFF2019 0.46 +0.7 895,178 - GFF2019 0.46 +0.5 895,178 - GFF2019 0.46 +0.1 895,189 + GFF2019 0.47 -0.5 895,190 - GFF2019 0.48 -1.2 895,190 - GFF2019 0.48 -0.1 895,190 - GFF2019 0.48 +0.2 895,190 - GFF2019 0.48 +1.1 895,190 - GFF2019 0.48 +0.3 895,190 - GFF2019 0.48 -0.4 895,190 - GFF2019 0.48 -0.3 895,190 - GFF2019 0.48 -0.0 895,190 - GFF2019 0.48 -0.2 895,190 - GFF2019 0.48 -0.9 895,346 + GFF2019 0.73 +0.1 895,346 + GFF2019 0.73 +0.7 895,346 + GFF2019 0.73 -0.9 895,346 + GFF2019 0.73 +0.1 895,346 + GFF2019 0.73 +1.1 895,346 + GFF2019 0.73 -1.5 895,346 + GFF2019 0.73 -0.3 895,346 + GFF2019 0.73 -0.5 895,346 + GFF2019 0.73 -0.0 895,346 + GFF2019 0.73 +0.6 895,347 - GFF2019 0.73 -0.8 895,347 - GFF2019 0.73 +0.1 895,347 - GFF2019 0.73 +0.2 895,347 - GFF2019 0.73 -2.1 895,347 - GFF2019 0.73 +1.1 895,347 - GFF2019 0.73 -0.1 895,347 - GFF2019 0.73 +1.7 895,347 - GFF2019 0.73 -1.2 895,347 - GFF2019 0.73 -1.6 895,347 - GFF2019 0.73 -0.6 895,358 + GFF2019 0.75 -0.2 895,359 - GFF2019 0.75 -0.4 895,359 - GFF2019 0.75 -1.0 895,359 - GFF2019 0.75 -0.4 895,359 - GFF2019 0.75 -0.1 895,516 + +0.2 895,516 + -0.6 895,516 + -0.2 895,516 + -0.3 895,516 + +0.0 895,516 + +0.8 895,516 + -0.0 895,517 - +0.5 895,517 - +0.1 895,517 - -0.1 895,517 - +0.2 895,517 - +0.0 895,517 - +0.8 895,517 - +0.1 895,517 - -0.4 895,517 - +0.1 895,517 - -0.5 895,533 + -0.3 895,533 + +0.9 895,533 + -0.5 895,533 + -1.5 895,533 + +0.6 895,533 + -0.2 895,533 + -0.1 895,534 - -0.5 895,534 - +1.0 895,534 - +1.1 895,534 - +0.1 895,686 + GFF2020 0.23 -2.1 895,686 + GFF2020 0.23 +1.3 895,686 + GFF2020 0.23 -0.6 895,686 + GFF2020 0.23 -0.2 895,686 + GFF2020 0.23 +0.5 895,686 + GFF2020 0.23 -0.8 895,687 - GFF2020 0.23 -0.2 895,687 - GFF2020 0.23 +0.5 895,687 - GFF2020 0.23 -0.4 895,687 - GFF2020 0.23 -0.2 895,687 - GFF2020 0.23 -0.3 895,687 - GFF2020 0.23 +0.9 895,687 - GFF2020 0.23 -0.1 895,687 - GFF2020 0.23 +1.4 895,743 + GFF2020 0.31 +0.2 895,743 + GFF2020 0.31 +0.3 895,743 + GFF2020 0.31 +0.3 895,744 - GFF2020 0.31 +0.1 895,744 - GFF2020 0.31 +0.1 895,744 - GFF2020 0.31 -0.0 895,744 - GFF2020 0.31 -0.1 895,744 - GFF2020 0.31 +0.3 895,744 - GFF2020 0.31 -0.4 895,744 - GFF2020 0.31 -0.2 895,744 - GFF2020 0.31 -0.2 895,744 - GFF2020 0.31 -1.1 895,744 - GFF2020 0.31 +0.1 895,744 - GFF2020 0.31 -0.3 895,744 - GFF2020 0.31 +0.1 895,744 - GFF2020 0.31 +0.2 895,744 - GFF2020 0.31 -0.2 895,744 - GFF2020 0.31 -0.1 895,744 - GFF2020 0.31 +0.1 895,744 - GFF2020 0.31 +0.3 895,768 - GFF2020 0.35 -0.2
Or see this region's nucleotide sequence