Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1973

Experiment: Ying_all64 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1972 and GFF1973 are separated by 150 nucleotidesGFF1973 and GFF1974 are separated by 400 nucleotides GFF1972 - Transcriptional regulator, at 845,131 to 846,060 GFF1972 GFF1973 - D-amino acid dehydrogenase small subunit (EC 1.4.99.1), at 846,211 to 847,563 GFF1973 GFF1974 - Probable hemagglutinin-related transmembrane protein, at 847,964 to 849,601 GFF1974 Position (kb) 846 847 848Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 845.525 kb on + strand, within GFF1972at 845.525 kb on + strand, within GFF1972at 845.526 kb on - strand, within GFF1972at 845.549 kb on + strand, within GFF1972at 845.549 kb on + strand, within GFF1972at 845.549 kb on + strand, within GFF1972at 845.549 kb on + strand, within GFF1972at 845.549 kb on + strand, within GFF1972at 845.549 kb on + strand, within GFF1972at 845.549 kb on + strand, within GFF1972at 845.549 kb on + strand, within GFF1972at 845.550 kb on - strand, within GFF1972at 845.550 kb on - strand, within GFF1972at 845.550 kb on - strand, within GFF1972at 845.550 kb on - strand, within GFF1972at 845.550 kb on - strand, within GFF1972at 846.108 kb on + strandat 846.109 kb on - strandat 846.109 kb on - strandat 846.163 kb on + strandat 846.163 kb on + strandat 846.163 kb on + strandat 846.163 kb on + strandat 846.164 kb on - strandat 846.164 kb on - strandat 846.164 kb on - strandat 846.164 kb on - strandat 846.173 kb on - strandat 846.361 kb on + strand, within GFF1973at 846.361 kb on + strand, within GFF1973at 846.361 kb on + strand, within GFF1973at 846.361 kb on + strand, within GFF1973at 846.361 kb on + strand, within GFF1973at 846.362 kb on - strand, within GFF1973at 846.362 kb on - strand, within GFF1973at 846.362 kb on - strand, within GFF1973at 846.362 kb on - strand, within GFF1973at 846.362 kb on - strand, within GFF1973at 846.410 kb on - strand, within GFF1973at 846.550 kb on + strand, within GFF1973at 846.551 kb on - strand, within GFF1973at 846.551 kb on - strand, within GFF1973at 846.598 kb on + strand, within GFF1973at 846.598 kb on + strand, within GFF1973at 846.598 kb on + strand, within GFF1973at 846.598 kb on + strand, within GFF1973at 846.599 kb on - strand, within GFF1973at 846.599 kb on - strand, within GFF1973at 846.599 kb on - strand, within GFF1973at 846.599 kb on - strand, within GFF1973at 846.599 kb on - strand, within GFF1973at 846.599 kb on - strand, within GFF1973at 846.628 kb on + strand, within GFF1973at 846.628 kb on + strand, within GFF1973at 846.629 kb on - strand, within GFF1973at 846.629 kb on - strand, within GFF1973at 846.629 kb on - strand, within GFF1973at 846.629 kb on - strand, within GFF1973at 846.631 kb on + strand, within GFF1973at 846.631 kb on + strand, within GFF1973at 846.631 kb on + strand, within GFF1973at 846.631 kb on + strand, within GFF1973at 846.631 kb on + strand, within GFF1973at 846.631 kb on + strand, within GFF1973at 846.631 kb on + strand, within GFF1973at 846.631 kb on + strand, within GFF1973at 846.632 kb on - strand, within GFF1973at 846.632 kb on - strand, within GFF1973at 846.632 kb on - strand, within GFF1973at 846.632 kb on - strand, within GFF1973at 846.632 kb on - strand, within GFF1973at 846.632 kb on - strand, within GFF1973at 846.632 kb on - strand, within GFF1973at 846.632 kb on - strand, within GFF1973at 846.632 kb on - strand, within GFF1973at 846.781 kb on + strand, within GFF1973at 846.781 kb on + strand, within GFF1973at 846.781 kb on + strand, within GFF1973at 846.781 kb on + strand, within GFF1973at 846.781 kb on + strand, within GFF1973at 846.781 kb on + strand, within GFF1973at 846.782 kb on - strand, within GFF1973at 846.782 kb on - strand, within GFF1973at 846.994 kb on + strand, within GFF1973at 846.995 kb on - strand, within GFF1973at 847.039 kb on + strand, within GFF1973at 847.040 kb on - strand, within GFF1973at 847.054 kb on + strand, within GFF1973at 847.054 kb on + strand, within GFF1973at 847.055 kb on - strand, within GFF1973at 847.055 kb on - strand, within GFF1973at 847.055 kb on - strand, within GFF1973at 847.594 kb on - strandat 847.611 kb on + strandat 847.611 kb on + strandat 847.611 kb on + strandat 847.611 kb on + strandat 847.611 kb on + strandat 847.612 kb on - strandat 847.612 kb on - strandat 847.612 kb on - strandat 847.614 kb on - strandat 847.618 kb on + strandat 847.618 kb on + strandat 847.639 kb on + strandat 847.639 kb on + strandat 847.725 kb on + strandat 847.725 kb on + strandat 847.725 kb on + strandat 847.725 kb on + strandat 847.725 kb on + strandat 847.725 kb on + strandat 847.725 kb on + strandat 847.725 kb on + strandat 847.725 kb on + strandat 847.725 kb on + strandat 847.725 kb on + strandat 847.726 kb on - strandat 847.726 kb on - strandat 847.726 kb on - strandat 847.726 kb on - strandat 847.726 kb on - strandat 847.726 kb on - strandat 847.726 kb on - strandat 847.807 kb on + strandat 847.807 kb on + strandat 847.807 kb on + strandat 847.807 kb on + strandat 847.807 kb on + strandat 847.808 kb on - strandat 847.808 kb on - strandat 847.989 kb on + strandat 847.989 kb on + strandat 847.989 kb on + strandat 847.990 kb on - strandat 847.990 kb on - strandat 848.138 kb on + strand, within GFF1974at 848.138 kb on + strand, within GFF1974at 848.138 kb on + strand, within GFF1974at 848.138 kb on + strand, within GFF1974at 848.138 kb on + strand, within GFF1974at 848.138 kb on + strand, within GFF1974at 848.138 kb on + strand, within GFF1974at 848.138 kb on + strand, within GFF1974at 848.138 kb on + strand, within GFF1974at 848.138 kb on + strand, within GFF1974at 848.138 kb on + strand, within GFF1974at 848.139 kb on - strand, within GFF1974at 848.139 kb on - strand, within GFF1974at 848.139 kb on - strand, within GFF1974at 848.139 kb on - strand, within GFF1974at 848.353 kb on + strand, within GFF1974at 848.462 kb on + strand, within GFF1974at 848.463 kb on - strand, within GFF1974at 848.500 kb on + strand, within GFF1974

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3
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845,525 + GFF1972 0.42 +0.7
845,525 + GFF1972 0.42 +2.7
845,526 - GFF1972 0.42 +0.5
845,549 + GFF1972 0.45 -0.9
845,549 + GFF1972 0.45 -0.5
845,549 + GFF1972 0.45 -0.3
845,549 + GFF1972 0.45 -1.2
845,549 + GFF1972 0.45 -1.7
845,549 + GFF1972 0.45 +1.5
845,549 + GFF1972 0.45 -0.9
845,549 + GFF1972 0.45 -2.2
845,550 - GFF1972 0.45 -0.7
845,550 - GFF1972 0.45 +0.5
845,550 - GFF1972 0.45 -0.9
845,550 - GFF1972 0.45 +1.3
845,550 - GFF1972 0.45 -2.8
846,108 + +1.4
846,109 - -0.3
846,109 - +0.2
846,163 + +0.4
846,163 + -0.2
846,163 + +1.1
846,163 + -1.4
846,164 - -0.3
846,164 - -1.4
846,164 - -0.8
846,164 - -0.3
846,173 - -0.3
846,361 + GFF1973 0.11 -0.5
846,361 + GFF1973 0.11 -0.7
846,361 + GFF1973 0.11 -1.8
846,361 + GFF1973 0.11 -1.1
846,361 + GFF1973 0.11 -0.6
846,362 - GFF1973 0.11 -0.6
846,362 - GFF1973 0.11 -1.4
846,362 - GFF1973 0.11 -1.2
846,362 - GFF1973 0.11 -0.3
846,362 - GFF1973 0.11 +0.5
846,410 - GFF1973 0.15 -0.5
846,550 + GFF1973 0.25 -1.2
846,551 - GFF1973 0.25 -0.8
846,551 - GFF1973 0.25 -0.9
846,598 + GFF1973 0.29 -1.2
846,598 + GFF1973 0.29 -1.3
846,598 + GFF1973 0.29 -1.3
846,598 + GFF1973 0.29 -1.0
846,599 - GFF1973 0.29 -0.9
846,599 - GFF1973 0.29 -0.5
846,599 - GFF1973 0.29 -1.3
846,599 - GFF1973 0.29 -1.2
846,599 - GFF1973 0.29 -1.5
846,599 - GFF1973 0.29 -1.3
846,628 + GFF1973 0.31 -0.9
846,628 + GFF1973 0.31 -1.2
846,629 - GFF1973 0.31 -0.9
846,629 - GFF1973 0.31 -0.3
846,629 - GFF1973 0.31 -0.5
846,629 - GFF1973 0.31 -0.6
846,631 + GFF1973 0.31 -1.2
846,631 + GFF1973 0.31 -0.7
846,631 + GFF1973 0.31 -1.4
846,631 + GFF1973 0.31 -0.7
846,631 + GFF1973 0.31 -0.1
846,631 + GFF1973 0.31 -1.5
846,631 + GFF1973 0.31 -0.3
846,631 + GFF1973 0.31 -1.6
846,632 - GFF1973 0.31 -1.3
846,632 - GFF1973 0.31 -0.5
846,632 - GFF1973 0.31 -1.2
846,632 - GFF1973 0.31 +0.2
846,632 - GFF1973 0.31 -1.1
846,632 - GFF1973 0.31 -1.1
846,632 - GFF1973 0.31 -0.9
846,632 - GFF1973 0.31 -0.6
846,632 - GFF1973 0.31 +0.1
846,781 + GFF1973 0.42 -1.1
846,781 + GFF1973 0.42 -2.4
846,781 + GFF1973 0.42 +0.5
846,781 + GFF1973 0.42 -1.0
846,781 + GFF1973 0.42 -0.2
846,781 + GFF1973 0.42 -0.3
846,782 - GFF1973 0.42 -1.2
846,782 - GFF1973 0.42 -1.4
846,994 + GFF1973 0.58 -0.7
846,995 - GFF1973 0.58 -0.8
847,039 + GFF1973 0.61 +1.1
847,040 - GFF1973 0.61 -2.3
847,054 + GFF1973 0.62 -1.0
847,054 + GFF1973 0.62 -0.2
847,055 - GFF1973 0.62 -1.5
847,055 - GFF1973 0.62 -1.9
847,055 - GFF1973 0.62 -1.4
847,594 - -0.5
847,611 + +1.7
847,611 + +1.0
847,611 + -0.1
847,611 + -0.1
847,611 + -0.1
847,612 - -0.1
847,612 - +0.3
847,612 - -0.5
847,614 - +0.3
847,618 + -0.0
847,618 + +0.1
847,639 + +0.1
847,639 + +0.1
847,725 + -0.3
847,725 + -0.0
847,725 + +0.3
847,725 + +0.1
847,725 + -0.4
847,725 + +0.1
847,725 + +0.6
847,725 + +0.6
847,725 + +0.2
847,725 + -0.4
847,725 + +0.3
847,726 - -0.4
847,726 - +0.4
847,726 - -1.4
847,726 - -0.5
847,726 - -0.1
847,726 - -1.0
847,726 - -0.1
847,807 + +0.2
847,807 + -0.5
847,807 + -1.9
847,807 + -0.2
847,807 + +1.1
847,808 - -0.7
847,808 - -0.2
847,989 + +1.1
847,989 + -0.6
847,989 + +0.1
847,990 - +0.5
847,990 - +0.5
848,138 + GFF1974 0.11 +0.1
848,138 + GFF1974 0.11 +0.5
848,138 + GFF1974 0.11 +0.1
848,138 + GFF1974 0.11 -0.3
848,138 + GFF1974 0.11 +0.2
848,138 + GFF1974 0.11 +0.1
848,138 + GFF1974 0.11 -0.4
848,138 + GFF1974 0.11 +0.7
848,138 + GFF1974 0.11 +0.5
848,138 + GFF1974 0.11 +0.2
848,138 + GFF1974 0.11 +0.0
848,139 - GFF1974 0.11 -0.0
848,139 - GFF1974 0.11 +0.2
848,139 - GFF1974 0.11 -0.7
848,139 - GFF1974 0.11 -0.9
848,353 + GFF1974 0.24 -1.2
848,462 + GFF1974 0.30 -0.3
848,463 - GFF1974 0.30 +0.3
848,500 + GFF1974 0.33 +0.3

Or see this region's nucleotide sequence