Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1861

Experiment: Ying_all64 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 3
723,765	+		GFF1859	0.84	-1.7
723,765	+		GFF1859	0.84	-1.5
723,765	+		GFF1859	0.84	-2.9
723,765	+		GFF1859	0.84	-1.7
723,765	+		GFF1859	0.84	-1.6
723,765	+		GFF1859	0.84	-2.0
723,804	+		GFF1859	0.88	-2.2
723,805	-		GFF1859	0.88	-2.0
723,805	-		GFF1859	0.88	-1.5
723,876	+				-3.2
723,877	-				-1.1
723,877	-				-1.2
723,877	-				-0.9
723,891	+				-1.8
724,043	+		GFF1860	0.13	-1.6
724,043	+		GFF1860	0.13	-2.4
724,043	+		GFF1860	0.13	-1.0
724,043	+		GFF1860	0.13	-1.4
724,043	+		GFF1860	0.13	-1.9
724,043	+		GFF1860	0.13	-1.9
724,043	+		GFF1860	0.13	-0.5
724,044	-		GFF1860	0.13	-0.4
724,044	-		GFF1860	0.13	-1.1
724,044	-		GFF1860	0.13	+0.6
724,044	-		GFF1860	0.13	-1.8
724,044	-		GFF1860	0.13	-1.7
724,274	+		GFF1860	0.42	+0.1
724,274	+		GFF1860	0.42	-1.5
724,275	-		GFF1860	0.42	-1.5
724,275	-		GFF1860	0.42	-1.1
724,275	-		GFF1860	0.42	-1.1
724,313	+		GFF1860	0.47	-1.5
724,313	+		GFF1860	0.47	-1.0
724,314	-		GFF1860	0.47	-0.3
724,314	-		GFF1860	0.47	-0.8
724,365	-		GFF1860	0.53	+0.1
724,365	-		GFF1860	0.53	-1.0
724,469	+		GFF1860	0.66	-1.9
724,469	+		GFF1860	0.66	-1.2
724,470	-		GFF1860	0.66	-1.0
724,511	+		GFF1860	0.71	-0.3
724,512	-		GFF1860	0.71	-0.6
724,512	-		GFF1860	0.71	-0.8
724,559	+		GFF1860	0.77	-1.6
724,559	+		GFF1860	0.77	-1.7
724,560	-		GFF1860	0.77	-1.6
724,562	+		GFF1860	0.78	-1.2
724,563	-		GFF1860	0.78	-0.7
724,563	-		GFF1860	0.78	-0.9
724,563	-		GFF1860	0.78	-0.1
724,563	-		GFF1860	0.78	+0.5
724,563	-		GFF1860	0.78	-0.7
724,563	-		GFF1860	0.78	-1.7
724,563	-		GFF1860	0.78	-2.0
724,577	+		GFF1860	0.79	-1.2
724,578	-		GFF1860	0.80	-0.7
724,578	-		GFF1860	0.80	-1.4
724,600	-		GFF1860	0.82	-1.4
724,664	+				-0.7
724,664	+				-0.9
724,664	+				-0.5
724,664	+				-0.9
724,665	-				-1.2
724,665	-				-1.3
724,665	-				-0.7
724,715	+				-2.3
724,715	+				-1.8
724,715	+				-1.1
724,715	+				-1.3
724,715	+				-0.7
724,715	+				-1.4
724,716	-				-0.8
724,716	-				-0.9
724,716	-				+0.6
724,716	-				-1.4
724,716	-				-1.6
724,716	-				-1.7
724,777	+				-1.3
724,777	+				-1.2
724,777	+				-1.9
724,777	+				-1.7
724,777	+				-1.7
724,777	+				-0.7
724,777	+				-0.3
724,777	+				-2.0
724,777	+				-1.8
724,777	+				-2.4
724,777	+				-2.1
724,778	-				-1.4
724,778	-				-0.8
724,778	-				-2.0
724,778	-				-1.7
724,778	-				-2.4
724,778	-				-2.0
724,778	-				-0.1
724,778	-				-1.2
724,778	-				+0.1
724,778	-				-3.3
724,778	-				-1.6
724,778	-				-1.6
724,907	-		GFF1861	0.17	-2.6
724,975	+		GFF1861	0.24	-2.1
724,975	+		GFF1861	0.24	+1.1
724,975	+		GFF1861	0.24	-2.4
724,975	+		GFF1861	0.24	+0.7
724,976	-		GFF1861	0.24	-0.9
725,008	+		GFF1861	0.28	-3.4
725,008	+		GFF1861	0.28	-1.3
725,008	+		GFF1861	0.28	-1.6
725,008	+		GFF1861	0.28	-1.1
725,008	+		GFF1861	0.28	+0.1
725,008	+		GFF1861	0.28	-1.2
725,008	+		GFF1861	0.28	-2.4
725,008	+		GFF1861	0.28	-0.7
725,008	+		GFF1861	0.28	-3.8
725,008	+		GFF1861	0.28	-0.1
725,008	+		GFF1861	0.28	-2.1
725,008	+		GFF1861	0.28	-1.8
725,008	+		GFF1861	0.28	-2.1
725,008	+		GFF1861	0.28	-2.8
725,009	-		GFF1861	0.28	-0.9
725,009	-		GFF1861	0.28	-1.9
725,009	-		GFF1861	0.28	-1.9
725,009	-		GFF1861	0.28	-1.8
725,009	-		GFF1861	0.28	+0.2
725,009	-		GFF1861	0.28	-1.7
725,009	-		GFF1861	0.28	-2.0
725,009	-		GFF1861	0.28	-1.5
725,009	-		GFF1861	0.28	-2.6
725,009	-		GFF1861	0.28	-1.1
725,009	-		GFF1861	0.28	-2.7
725,047	+		GFF1861	0.32	-1.5
725,047	+		GFF1861	0.32	-1.1
725,047	+		GFF1861	0.32	-1.5
725,047	+		GFF1861	0.32	-0.9
725,047	+		GFF1861	0.32	-2.5
725,047	+		GFF1861	0.32	-1.8
725,047	+		GFF1861	0.32	-0.5
725,048	-		GFF1861	0.32	-1.9
725,048	-		GFF1861	0.32	-1.3
725,048	-		GFF1861	0.32	-2.1
725,048	-		GFF1861	0.32	+0.1
725,048	-		GFF1861	0.32	-1.2
725,071	+		GFF1861	0.34	-1.8
725,071	+		GFF1861	0.34	-1.5
725,071	+		GFF1861	0.34	-1.4
725,071	+		GFF1861	0.34	-0.9
725,072	-		GFF1861	0.34	-2.3
725,072	-		GFF1861	0.34	-1.6
725,072	-		GFF1861	0.34	-1.3
725,072	-		GFF1861	0.34	-1.5
725,072	-		GFF1861	0.34	-1.2
725,072	-		GFF1861	0.34	-1.0
725,263	+		GFF1861	0.54	-0.5
725,263	+		GFF1861	0.54	-0.8
725,263	+		GFF1861	0.54	-1.5
725,263	+		GFF1861	0.54	+1.1
725,263	+		GFF1861	0.54	-2.4
725,263	+		GFF1861	0.54	-1.5
725,263	+		GFF1861	0.54	-1.2
725,263	+		GFF1861	0.54	-2.5
725,263	+		GFF1861	0.54	-1.6
725,263	+		GFF1861	0.54	+1.1
725,263	+		GFF1861	0.54	+0.7
725,263	+		GFF1861	0.54	-2.3
725,264	-		GFF1861	0.54	-1.4
725,264	-		GFF1861	0.54	-2.8
725,264	-		GFF1861	0.54	-1.8
725,264	-		GFF1861	0.54	-2.1
725,264	-		GFF1861	0.54	-1.6
725,264	-		GFF1861	0.54	-1.3
725,264	-		GFF1861	0.54	-0.6
725,264	-		GFF1861	0.54	-1.8
725,264	-		GFF1861	0.54	-0.6
725,264	-		GFF1861	0.54	-2.1
725,302	+		GFF1861	0.58	-1.6
725,302	+		GFF1861	0.58	-0.6
725,303	-		GFF1861	0.58	-2.4
725,303	-		GFF1861	0.58	-1.4
725,303	-		GFF1861	0.58	-1.8
725,303	-		GFF1861	0.58	-2.2
725,303	-		GFF1861	0.58	-2.5
725,380	+		GFF1861	0.66	-1.5
725,380	+		GFF1861	0.66	-1.5
725,380	+		GFF1861	0.66	-1.5
725,380	+		GFF1861	0.66	-1.7
725,380	+		GFF1861	0.66	-2.6
725,381	-		GFF1861	0.66	+1.1
725,389	+		GFF1861	0.67	-2.1
725,389	+		GFF1861	0.67	-1.9
725,389	+		GFF1861	0.67	-2.5
725,389	+		GFF1861	0.67	-1.5
725,389	+		GFF1861	0.67	-2.0
725,390	-		GFF1861	0.67	-1.8
725,390	-		GFF1861	0.67	-2.1
725,390	-		GFF1861	0.67	-1.7
725,390	-		GFF1861	0.67	-1.0
725,390	-		GFF1861	0.67	-1.2
725,390	-		GFF1861	0.67	+0.1
725,449	+		GFF1861	0.73	-2.1
725,449	+		GFF1861	0.73	-0.8
725,449	+		GFF1861	0.73	-0.9
725,449	+		GFF1861	0.73	-2.2
725,449	+		GFF1861	0.73	-2.7
725,449	+		GFF1861	0.73	-1.5
725,450	-		GFF1861	0.73	-1.2
725,450	-		GFF1861	0.73	-0.2
725,450	-		GFF1861	0.73	-1.2
725,450	-		GFF1861	0.73	-1.7
725,509	+		GFF1861	0.79	-2.2
725,509	+		GFF1861	0.79	-1.0
725,509	+		GFF1861	0.79	-2.0
725,509	+		GFF1861	0.79	-1.3
725,509	+		GFF1861	0.79	-2.8
725,509	+		GFF1861	0.79	-1.6
725,509	+		GFF1861	0.79	-1.5
725,509	+		GFF1861	0.79	+0.6
725,509	+		GFF1861	0.79	-1.6
725,509	+		GFF1861	0.79	-1.7
725,510	-		GFF1861	0.79	-2.2
725,510	-		GFF1861	0.79	-2.1
725,510	-		GFF1861	0.79	-1.0
725,510	-		GFF1861	0.79	-1.9
725,510	-		GFF1861	0.79	-1.1
725,510	-		GFF1861	0.79	-2.0
725,510	-		GFF1861	0.79	-2.2
725,510	-		GFF1861	0.79	-2.7
725,510	-		GFF1861	0.79	-2.7
725,542	+		GFF1861	0.82	-1.5
725,543	-		GFF1861	0.83	+0.3
725,551	+		GFF1861	0.83	-1.1
725,551	+		GFF1861	0.83	-2.0
725,552	-		GFF1861	0.83	+0.1
725,552	-		GFF1861	0.83	-2.7
725,552	-		GFF1861	0.83	-1.8
725,552	-		GFF1861	0.83	-2.4
725,552	-		GFF1861	0.83	-1.6
725,552	-		GFF1861	0.83	-1.2
725,552	-		GFF1861	0.83	-0.5
725,707	+				-0.1
725,708	-				-0.3
725,943	+		GFF1862	0.28	-1.6
725,943	+		GFF1862	0.28	-1.2
725,943	+		GFF1862	0.28	-0.7
725,943	+		GFF1862	0.28	-1.6
725,943	+		GFF1862	0.28	-1.3
725,943	+		GFF1862	0.28	-3.4
725,943	-		GFF1862	0.28	-1.8
725,944	-		GFF1862	0.28	-2.1
725,944	-		GFF1862	0.28	-1.7
725,944	-		GFF1862	0.28	-2.2
725,944	-		GFF1862	0.28	+1.1
725,944	-		GFF1862	0.28	-1.7
725,944	-		GFF1862	0.28	-1.8
725,944	-		GFF1862	0.28	-0.9
726,015	+		GFF1862	0.38	-2.3
726,016	-		GFF1862	0.38	+0.4
726,016	-		GFF1862	0.38	-2.4
726,016	-		GFF1862	0.38	-0.9
726,016	-		GFF1862	0.38	-3.2
726,171	+		GFF1862	0.58	-2.5
726,171	+		GFF1862	0.58	-1.4
726,171	+		GFF1862	0.58	-0.9
726,171	+		GFF1862	0.58	-2.1
726,172	-		GFF1862	0.58	-2.6
726,172	-		GFF1862	0.58	+0.5
726,249	+		GFF1862	0.68	-2.3
726,250	-		GFF1862	0.68	-0.3
726,250	-		GFF1862	0.68	-1.5
726,459	+				-0.9