Experiment: Ying_all64 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1857 and GFF1858 overlap by 4 nucleotides GFF1858 and GFF1859 overlap by 4 nucleotides
GFF1857 - SAM-dependent methyltransferases, at 721,055 to 721,963
GFF1857
GFF1858 - glycosyl transferase family 2, at 721,960 to 722,808
GFF1858
GFF1859 - CgeB family protein, at 722,805 to 723,941
GFF1859
Position (kb) 721
722
723 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 721.002 kb on - strand at 721.002 kb on - strand at 721.002 kb on - strand at 721.002 kb on - strand at 721.097 kb on + strand at 721.097 kb on + strand at 721.097 kb on + strand at 721.098 kb on - strand at 721.098 kb on - strand at 721.098 kb on - strand at 721.098 kb on - strand at 721.098 kb on - strand at 721.106 kb on + strand at 721.106 kb on + strand at 721.106 kb on + strand at 721.106 kb on + strand at 721.106 kb on + strand at 721.106 kb on + strand at 721.106 kb on + strand at 721.106 kb on + strand at 721.106 kb on + strand at 721.106 kb on + strand at 721.106 kb on + strand at 721.107 kb on - strand at 721.107 kb on - strand at 721.107 kb on - strand at 721.107 kb on - strand at 721.107 kb on - strand at 721.107 kb on - strand at 721.107 kb on - strand at 721.107 kb on - strand at 721.107 kb on - strand at 721.107 kb on - strand at 721.109 kb on + strand at 721.109 kb on + strand at 721.109 kb on + strand at 721.220 kb on + strand, within GFF1857 at 721.220 kb on + strand, within GFF1857 at 721.220 kb on + strand, within GFF1857 at 721.220 kb on + strand, within GFF1857 at 721.221 kb on - strand, within GFF1857 at 721.221 kb on - strand, within GFF1857 at 721.221 kb on - strand, within GFF1857 at 721.221 kb on - strand, within GFF1857 at 721.449 kb on + strand, within GFF1857 at 721.449 kb on + strand, within GFF1857 at 721.450 kb on - strand, within GFF1857 at 721.450 kb on - strand, within GFF1857 at 721.450 kb on - strand, within GFF1857 at 721.587 kb on - strand, within GFF1857 at 721.587 kb on - strand, within GFF1857 at 722.533 kb on + strand, within GFF1858 at 722.533 kb on + strand, within GFF1858 at 722.533 kb on + strand, within GFF1858 at 722.534 kb on - strand, within GFF1858 at 722.534 kb on - strand, within GFF1858 at 722.534 kb on - strand, within GFF1858 at 722.534 kb on - strand, within GFF1858 at 722.534 kb on - strand, within GFF1858 at 722.545 kb on + strand, within GFF1858 at 722.545 kb on + strand, within GFF1858 at 722.546 kb on - strand, within GFF1858 at 722.546 kb on - strand, within GFF1858 at 722.578 kb on + strand, within GFF1858 at 722.819 kb on - strand at 722.829 kb on + strand at 722.829 kb on + strand at 722.829 kb on + strand at 722.829 kb on + strand at 722.829 kb on + strand at 722.829 kb on + strand at 722.829 kb on + strand at 722.829 kb on + strand at 722.829 kb on + strand at 722.830 kb on - strand at 722.830 kb on - strand at 722.830 kb on - strand at 722.830 kb on - strand at 722.830 kb on - strand at 722.830 kb on - strand at 722.830 kb on - strand at 722.832 kb on + strand at 722.832 kb on + strand at 722.832 kb on + strand at 722.832 kb on + strand at 722.832 kb on + strand at 722.832 kb on + strand at 722.832 kb on + strand at 722.832 kb on + strand at 722.832 kb on + strand at 722.833 kb on - strand at 722.833 kb on - strand at 722.833 kb on - strand at 722.833 kb on - strand at 722.833 kb on - strand at 722.833 kb on - strand at 722.857 kb on - strand at 722.889 kb on + strand at 722.889 kb on + strand at 722.889 kb on + strand at 722.889 kb on + strand at 722.889 kb on + strand at 722.889 kb on + strand at 722.943 kb on + strand, within GFF1859 at 722.943 kb on + strand, within GFF1859 at 722.943 kb on + strand, within GFF1859 at 722.944 kb on - strand, within GFF1859 at 722.944 kb on - strand, within GFF1859 at 722.944 kb on - strand, within GFF1859 at 723.174 kb on + strand, within GFF1859 at 723.174 kb on + strand, within GFF1859 at 723.174 kb on + strand, within GFF1859 at 723.175 kb on - strand, within GFF1859 at 723.175 kb on - strand, within GFF1859 at 723.175 kb on - strand, within GFF1859 at 723.228 kb on + strand, within GFF1859 at 723.228 kb on + strand, within GFF1859 at 723.228 kb on + strand, within GFF1859 at 723.228 kb on + strand, within GFF1859 at 723.228 kb on + strand, within GFF1859 at 723.228 kb on + strand, within GFF1859 at 723.229 kb on - strand, within GFF1859 at 723.229 kb on - strand, within GFF1859 at 723.229 kb on - strand, within GFF1859 at 723.291 kb on + strand, within GFF1859 at 723.291 kb on + strand, within GFF1859 at 723.292 kb on - strand, within GFF1859 at 723.361 kb on - strand, within GFF1859 at 723.361 kb on - strand, within GFF1859 at 723.361 kb on - strand, within GFF1859 at 723.361 kb on - strand, within GFF1859 at 723.469 kb on + strand, within GFF1859 at 723.483 kb on + strand, within GFF1859 at 723.483 kb on + strand, within GFF1859 at 723.483 kb on + strand, within GFF1859 at 723.483 kb on + strand, within GFF1859 at 723.594 kb on + strand, within GFF1859 at 723.594 kb on + strand, within GFF1859 at 723.594 kb on + strand, within GFF1859 at 723.594 kb on + strand, within GFF1859 at 723.594 kb on + strand, within GFF1859 at 723.594 kb on + strand, within GFF1859 at 723.594 kb on + strand, within GFF1859 at 723.594 kb on + strand, within GFF1859 at 723.594 kb on + strand, within GFF1859 at 723.594 kb on + strand, within GFF1859 at 723.594 kb on + strand, within GFF1859 at 723.594 kb on + strand, within GFF1859 at 723.594 kb on + strand, within GFF1859 at 723.595 kb on - strand, within GFF1859 at 723.595 kb on - strand, within GFF1859 at 723.595 kb on - strand, within GFF1859 at 723.595 kb on - strand, within GFF1859 at 723.595 kb on - strand, within GFF1859 at 723.595 kb on - strand, within GFF1859 at 723.675 kb on + strand, within GFF1859 at 723.675 kb on + strand, within GFF1859 at 723.676 kb on - strand, within GFF1859 at 723.676 kb on - strand, within GFF1859 at 723.765 kb on + strand, within GFF1859 at 723.765 kb on + strand, within GFF1859 at 723.765 kb on + strand, within GFF1859 at 723.765 kb on + strand, within GFF1859 at 723.765 kb on + strand, within GFF1859 at 723.765 kb on + strand, within GFF1859 at 723.804 kb on + strand, within GFF1859 at 723.805 kb on - strand, within GFF1859 at 723.805 kb on - strand, within GFF1859
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3 remove 721,002 - -0.6 721,002 - -0.5 721,002 - -1.0 721,002 - -1.1 721,097 + -1.0 721,097 + +1.1 721,097 + -1.4 721,098 - -0.9 721,098 - -0.4 721,098 - -0.9 721,098 - -1.1 721,098 - -0.9 721,106 + -1.5 721,106 + -0.7 721,106 + +0.0 721,106 + -0.8 721,106 + -0.8 721,106 + +0.1 721,106 + -0.4 721,106 + -1.9 721,106 + -0.2 721,106 + +0.4 721,106 + -0.1 721,107 - -1.5 721,107 - -0.8 721,107 - -1.4 721,107 - -0.1 721,107 - -0.8 721,107 - -0.9 721,107 - -0.5 721,107 - -1.0 721,107 - -0.0 721,107 - -0.6 721,109 + +0.6 721,109 + -1.7 721,109 + +0.5 721,220 + GFF1857 0.18 +1.0 721,220 + GFF1857 0.18 -0.2 721,220 + GFF1857 0.18 +0.4 721,220 + GFF1857 0.18 +0.1 721,221 - GFF1857 0.18 -0.8 721,221 - GFF1857 0.18 -0.2 721,221 - GFF1857 0.18 +0.7 721,221 - GFF1857 0.18 +0.4 721,449 + GFF1857 0.43 -0.3 721,449 + GFF1857 0.43 +0.2 721,450 - GFF1857 0.43 +0.1 721,450 - GFF1857 0.43 -0.1 721,450 - GFF1857 0.43 +0.1 721,587 - GFF1857 0.59 -1.8 721,587 - GFF1857 0.59 -1.6 722,533 + GFF1858 0.67 -1.2 722,533 + GFF1858 0.67 -1.1 722,533 + GFF1858 0.67 -0.2 722,534 - GFF1858 0.68 -1.5 722,534 - GFF1858 0.68 -1.7 722,534 - GFF1858 0.68 -2.1 722,534 - GFF1858 0.68 -2.1 722,534 - GFF1858 0.68 -1.7 722,545 + GFF1858 0.69 -0.4 722,545 + GFF1858 0.69 -0.7 722,546 - GFF1858 0.69 -2.2 722,546 - GFF1858 0.69 +0.1 722,578 + GFF1858 0.73 -1.5 722,819 - -0.9 722,829 + -2.1 722,829 + -1.5 722,829 + -3.9 722,829 + +1.1 722,829 + -2.2 722,829 + -1.2 722,829 + -0.9 722,829 + -1.6 722,829 + -0.6 722,830 - +0.3 722,830 - -0.9 722,830 - -1.2 722,830 - -1.5 722,830 - -2.4 722,830 - +1.1 722,830 - -1.7 722,832 + +0.1 722,832 + -2.0 722,832 + +1.1 722,832 + -1.2 722,832 + -1.6 722,832 + -0.1 722,832 + -1.6 722,832 + -0.5 722,832 + -1.0 722,833 - -1.8 722,833 - -1.5 722,833 - -1.6 722,833 - -0.8 722,833 - -2.2 722,833 - -1.7 722,857 - -0.5 722,889 + +0.5 722,889 + -0.2 722,889 + -2.4 722,889 + -1.8 722,889 + -2.6 722,889 + -1.8 722,943 + GFF1859 0.12 +0.1 722,943 + GFF1859 0.12 +0.1 722,943 + GFF1859 0.12 -2.2 722,944 - GFF1859 0.12 -1.9 722,944 - GFF1859 0.12 -1.3 722,944 - GFF1859 0.12 -1.0 723,174 + GFF1859 0.32 -1.7 723,174 + GFF1859 0.32 -0.9 723,174 + GFF1859 0.32 -1.5 723,175 - GFF1859 0.33 -0.9 723,175 - GFF1859 0.33 -0.5 723,175 - GFF1859 0.33 -1.7 723,228 + GFF1859 0.37 -3.0 723,228 + GFF1859 0.37 -1.8 723,228 + GFF1859 0.37 -1.4 723,228 + GFF1859 0.37 -0.5 723,228 + GFF1859 0.37 -1.0 723,228 + GFF1859 0.37 -1.9 723,229 - GFF1859 0.37 -1.9 723,229 - GFF1859 0.37 -1.1 723,229 - GFF1859 0.37 -1.9 723,291 + GFF1859 0.43 -1.2 723,291 + GFF1859 0.43 -0.7 723,292 - GFF1859 0.43 -1.4 723,361 - GFF1859 0.49 -1.8 723,361 - GFF1859 0.49 -1.8 723,361 - GFF1859 0.49 -0.1 723,361 - GFF1859 0.49 -1.6 723,469 + GFF1859 0.58 -0.5 723,483 + GFF1859 0.60 -2.7 723,483 + GFF1859 0.60 -1.2 723,483 + GFF1859 0.60 -2.2 723,483 + GFF1859 0.60 -1.3 723,594 + GFF1859 0.69 -1.2 723,594 + GFF1859 0.69 -1.2 723,594 + GFF1859 0.69 -0.9 723,594 + GFF1859 0.69 -0.4 723,594 + GFF1859 0.69 -1.4 723,594 + GFF1859 0.69 -2.1 723,594 + GFF1859 0.69 -0.7 723,594 + GFF1859 0.69 -1.4 723,594 + GFF1859 0.69 -2.8 723,594 + GFF1859 0.69 -0.4 723,594 + GFF1859 0.69 -1.9 723,594 + GFF1859 0.69 -1.7 723,594 + GFF1859 0.69 -2.1 723,595 - GFF1859 0.69 +0.1 723,595 - GFF1859 0.69 -1.7 723,595 - GFF1859 0.69 -1.6 723,595 - GFF1859 0.69 -2.2 723,595 - GFF1859 0.69 -0.3 723,595 - GFF1859 0.69 -1.2 723,675 + GFF1859 0.77 -0.9 723,675 + GFF1859 0.77 -1.9 723,676 - GFF1859 0.77 -2.1 723,676 - GFF1859 0.77 +0.5 723,765 + GFF1859 0.84 -1.7 723,765 + GFF1859 0.84 -1.5 723,765 + GFF1859 0.84 -2.9 723,765 + GFF1859 0.84 -1.7 723,765 + GFF1859 0.84 -1.6 723,765 + GFF1859 0.84 -2.0 723,804 + GFF1859 0.88 -2.2 723,805 - GFF1859 0.88 -2.0 723,805 - GFF1859 0.88 -1.5
Or see this region's nucleotide sequence