Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1839

Experiment: Ying_all64 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1837 and GFF1838 overlap by 4 nucleotidesGFF1838 and GFF1839 overlap by 4 nucleotidesGFF1839 and GFF1840 overlap by 4 nucleotidesGFF1840 and GFF1841 are separated by 1 nucleotides GFF1837 - dTDP-glucose 4,6-dehydratase (EC 4.2.1.46), at 700,836 to 701,906 GFF1837 GFF1838 - dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133), at 701,903 to 702,802 GFF1838 GFF1839 - Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24), at 702,799 to 703,710 GFF1839 GFF1840 - dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13), at 703,707 to 704,267 GFF1840 GFF1841 - GDP-L-fucose synthetase (EC 1.1.1.271), at 704,269 to 705,243 GFF1841 Position (kb) 702 703 704Strain fitness (log2 ratio) -3 -2 -1 0 1at 701.859 kb on + strandat 701.859 kb on + strandat 701.860 kb on - strandat 701.860 kb on - strandat 701.860 kb on - strandat 701.883 kb on + strandat 701.883 kb on + strandat 701.884 kb on - strandat 702.913 kb on + strand, within GFF1839at 702.913 kb on + strand, within GFF1839at 702.913 kb on + strand, within GFF1839at 702.913 kb on + strand, within GFF1839at 702.914 kb on - strand, within GFF1839at 702.914 kb on - strand, within GFF1839at 702.914 kb on - strand, within GFF1839at 702.931 kb on + strand, within GFF1839at 702.931 kb on + strand, within GFF1839at 702.931 kb on + strand, within GFF1839at 702.931 kb on + strand, within GFF1839at 702.931 kb on + strand, within GFF1839at 702.931 kb on + strand, within GFF1839at 702.931 kb on + strand, within GFF1839at 702.931 kb on + strand, within GFF1839at 702.932 kb on - strand, within GFF1839at 702.932 kb on - strand, within GFF1839at 702.932 kb on - strand, within GFF1839at 702.932 kb on - strand, within GFF1839at 702.932 kb on - strand, within GFF1839at 702.932 kb on - strand, within GFF1839at 702.935 kb on - strand, within GFF1839at 703.057 kb on + strand, within GFF1839at 703.057 kb on + strand, within GFF1839at 703.058 kb on - strand, within GFF1839at 703.058 kb on - strand, within GFF1839at 703.159 kb on + strand, within GFF1839at 703.159 kb on + strand, within GFF1839at 703.159 kb on + strand, within GFF1839at 703.159 kb on + strand, within GFF1839at 703.159 kb on + strand, within GFF1839at 703.159 kb on + strand, within GFF1839at 703.159 kb on + strand, within GFF1839at 703.159 kb on + strand, within GFF1839at 703.159 kb on + strand, within GFF1839at 703.159 kb on + strand, within GFF1839at 703.160 kb on - strand, within GFF1839at 703.160 kb on - strand, within GFF1839at 703.162 kb on + strand, within GFF1839at 703.162 kb on + strand, within GFF1839at 703.231 kb on + strand, within GFF1839at 703.231 kb on + strand, within GFF1839at 703.231 kb on + strand, within GFF1839at 703.256 kb on - strand, within GFF1839at 703.330 kb on + strand, within GFF1839at 703.330 kb on + strand, within GFF1839at 703.330 kb on + strand, within GFF1839at 703.330 kb on + strand, within GFF1839at 703.330 kb on + strand, within GFF1839at 703.330 kb on + strand, within GFF1839at 703.330 kb on + strand, within GFF1839at 703.331 kb on - strand, within GFF1839at 703.348 kb on + strand, within GFF1839at 703.348 kb on + strand, within GFF1839at 703.348 kb on + strand, within GFF1839at 703.348 kb on + strand, within GFF1839at 703.348 kb on + strand, within GFF1839at 703.348 kb on + strand, within GFF1839at 703.349 kb on - strand, within GFF1839at 703.354 kb on + strand, within GFF1839at 703.354 kb on + strand, within GFF1839at 703.354 kb on + strand, within GFF1839at 703.438 kb on + strand, within GFF1839at 703.670 kb on - strandat 704.268 kb on + strandat 704.268 kb on + strandat 704.268 kb on + strandat 704.268 kb on + strandat 704.268 kb on + strandat 704.268 kb on + strandat 704.268 kb on + strandat 704.268 kb on + strandat 704.268 kb on + strandat 704.268 kb on + strandat 704.268 kb on + strandat 704.268 kb on + strandat 704.268 kb on + strandat 704.268 kb on + strandat 704.268 kb on + strandat 704.268 kb on + strandat 704.269 kb on - strandat 704.269 kb on - strandat 704.269 kb on - strandat 704.269 kb on - strandat 704.269 kb on - strandat 704.269 kb on - strandat 704.269 kb on - strandat 704.269 kb on - strandat 704.269 kb on - strandat 704.269 kb on - strandat 704.269 kb on - strandat 704.269 kb on - strandat 704.269 kb on - strandat 704.290 kb on + strandat 704.290 kb on + strandat 704.291 kb on - strandat 704.291 kb on - strandat 704.291 kb on - strandat 704.291 kb on - strandat 704.455 kb on + strand, within GFF1841at 704.455 kb on + strand, within GFF1841at 704.455 kb on + strand, within GFF1841at 704.456 kb on - strand, within GFF1841at 704.456 kb on - strand, within GFF1841at 704.500 kb on + strand, within GFF1841at 704.500 kb on + strand, within GFF1841at 704.500 kb on + strand, within GFF1841at 704.501 kb on - strand, within GFF1841at 704.501 kb on - strand, within GFF1841at 704.501 kb on - strand, within GFF1841at 704.518 kb on + strand, within GFF1841at 704.518 kb on + strand, within GFF1841at 704.518 kb on + strand, within GFF1841at 704.518 kb on + strand, within GFF1841at 704.518 kb on + strand, within GFF1841at 704.518 kb on + strand, within GFF1841at 704.518 kb on + strand, within GFF1841at 704.518 kb on + strand, within GFF1841at 704.519 kb on - strand, within GFF1841at 704.519 kb on - strand, within GFF1841at 704.519 kb on - strand, within GFF1841at 704.519 kb on - strand, within GFF1841at 704.519 kb on - strand, within GFF1841at 704.519 kb on - strand, within GFF1841at 704.519 kb on - strand, within GFF1841at 704.519 kb on - strand, within GFF1841at 704.519 kb on - strand, within GFF1841at 704.519 kb on - strand, within GFF1841at 704.519 kb on - strand, within GFF1841at 704.519 kb on - strand, within GFF1841at 704.608 kb on + strand, within GFF1841at 704.608 kb on + strand, within GFF1841at 704.608 kb on + strand, within GFF1841at 704.608 kb on + strand, within GFF1841at 704.609 kb on - strand, within GFF1841at 704.683 kb on + strand, within GFF1841at 704.683 kb on + strand, within GFF1841at 704.683 kb on + strand, within GFF1841at 704.683 kb on + strand, within GFF1841at 704.683 kb on + strand, within GFF1841at 704.683 kb on + strand, within GFF1841at 704.683 kb on + strand, within GFF1841at 704.684 kb on - strand, within GFF1841at 704.684 kb on - strand, within GFF1841at 704.684 kb on - strand, within GFF1841at 704.684 kb on - strand, within GFF1841at 704.684 kb on - strand, within GFF1841

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3
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701,859 + +0.4
701,859 + +0.6
701,860 - -0.6
701,860 - -0.2
701,860 - -0.7
701,883 + -0.3
701,883 + -0.1
701,884 - -1.5
702,913 + GFF1839 0.12 -2.7
702,913 + GFF1839 0.12 -0.5
702,913 + GFF1839 0.12 -0.8
702,913 + GFF1839 0.12 -1.2
702,914 - GFF1839 0.13 -2.1
702,914 - GFF1839 0.13 -0.2
702,914 - GFF1839 0.13 -2.2
702,931 + GFF1839 0.14 -0.9
702,931 + GFF1839 0.14 -2.5
702,931 + GFF1839 0.14 -1.7
702,931 + GFF1839 0.14 -3.4
702,931 + GFF1839 0.14 -1.6
702,931 + GFF1839 0.14 -2.2
702,931 + GFF1839 0.14 +0.1
702,931 + GFF1839 0.14 -2.4
702,932 - GFF1839 0.15 -1.6
702,932 - GFF1839 0.15 -0.9
702,932 - GFF1839 0.15 -2.1
702,932 - GFF1839 0.15 -1.9
702,932 - GFF1839 0.15 -1.7
702,932 - GFF1839 0.15 -1.9
702,935 - GFF1839 0.15 -1.9
703,057 + GFF1839 0.28 -2.2
703,057 + GFF1839 0.28 -1.9
703,058 - GFF1839 0.28 -0.7
703,058 - GFF1839 0.28 -1.5
703,159 + GFF1839 0.39 -1.9
703,159 + GFF1839 0.39 -1.3
703,159 + GFF1839 0.39 -1.2
703,159 + GFF1839 0.39 -1.2
703,159 + GFF1839 0.39 -2.7
703,159 + GFF1839 0.39 +0.1
703,159 + GFF1839 0.39 -2.9
703,159 + GFF1839 0.39 -2.3
703,159 + GFF1839 0.39 -0.5
703,159 + GFF1839 0.39 -2.2
703,160 - GFF1839 0.40 -1.2
703,160 - GFF1839 0.40 -2.5
703,162 + GFF1839 0.40 -0.2
703,162 + GFF1839 0.40 -1.2
703,231 + GFF1839 0.47 -0.7
703,231 + GFF1839 0.47 -1.2
703,231 + GFF1839 0.47 -2.2
703,256 - GFF1839 0.50 -2.4
703,330 + GFF1839 0.58 -1.9
703,330 + GFF1839 0.58 -2.2
703,330 + GFF1839 0.58 -0.9
703,330 + GFF1839 0.58 +1.1
703,330 + GFF1839 0.58 -2.9
703,330 + GFF1839 0.58 -1.9
703,330 + GFF1839 0.58 +0.1
703,331 - GFF1839 0.58 -0.5
703,348 + GFF1839 0.60 -1.7
703,348 + GFF1839 0.60 -0.5
703,348 + GFF1839 0.60 -0.5
703,348 + GFF1839 0.60 -2.5
703,348 + GFF1839 0.60 -1.2
703,348 + GFF1839 0.60 -1.9
703,349 - GFF1839 0.60 -0.5
703,354 + GFF1839 0.61 -2.7
703,354 + GFF1839 0.61 -2.8
703,354 + GFF1839 0.61 -1.2
703,438 + GFF1839 0.70 -0.8
703,670 - -1.7
704,268 + +0.8
704,268 + +0.2
704,268 + +1.5
704,268 + +0.5
704,268 + -0.2
704,268 + +0.5
704,268 + +0.8
704,268 + -0.9
704,268 + +0.2
704,268 + +0.1
704,268 + -0.2
704,268 + +1.1
704,268 + +0.4
704,268 + +0.8
704,268 + +0.3
704,268 + -0.2
704,269 - +0.4
704,269 - +0.4
704,269 - +0.1
704,269 - +0.3
704,269 - -0.2
704,269 - +0.1
704,269 - +0.1
704,269 - +0.2
704,269 - -0.3
704,269 - -0.6
704,269 - +0.1
704,269 - +0.5
704,269 - +0.5
704,290 + -1.9
704,290 + -1.6
704,291 - +0.1
704,291 - -1.0
704,291 - +1.4
704,291 - -1.8
704,455 + GFF1841 0.19 -2.1
704,455 + GFF1841 0.19 -1.5
704,455 + GFF1841 0.19 -0.5
704,456 - GFF1841 0.19 -0.5
704,456 - GFF1841 0.19 -2.5
704,500 + GFF1841 0.24 -1.4
704,500 + GFF1841 0.24 -0.5
704,500 + GFF1841 0.24 -0.2
704,501 - GFF1841 0.24 -0.5
704,501 - GFF1841 0.24 +0.1
704,501 - GFF1841 0.24 -1.6
704,518 + GFF1841 0.26 -1.7
704,518 + GFF1841 0.26 -1.5
704,518 + GFF1841 0.26 -1.5
704,518 + GFF1841 0.26 -2.4
704,518 + GFF1841 0.26 -0.9
704,518 + GFF1841 0.26 -1.6
704,518 + GFF1841 0.26 +0.1
704,518 + GFF1841 0.26 -0.7
704,519 - GFF1841 0.26 -0.2
704,519 - GFF1841 0.26 -0.9
704,519 - GFF1841 0.26 -2.1
704,519 - GFF1841 0.26 -1.4
704,519 - GFF1841 0.26 +0.1
704,519 - GFF1841 0.26 -1.9
704,519 - GFF1841 0.26 -1.5
704,519 - GFF1841 0.26 -2.2
704,519 - GFF1841 0.26 -1.7
704,519 - GFF1841 0.26 -1.7
704,519 - GFF1841 0.26 -1.3
704,519 - GFF1841 0.26 -0.4
704,608 + GFF1841 0.35 -2.5
704,608 + GFF1841 0.35 -0.9
704,608 + GFF1841 0.35 -0.6
704,608 + GFF1841 0.35 -2.4
704,609 - GFF1841 0.35 -1.0
704,683 + GFF1841 0.42 -1.6
704,683 + GFF1841 0.42 -1.5
704,683 + GFF1841 0.42 -0.5
704,683 + GFF1841 0.42 -1.8
704,683 + GFF1841 0.42 -0.7
704,683 + GFF1841 0.42 -0.2
704,683 + GFF1841 0.42 -0.6
704,684 - GFF1841 0.43 +0.2
704,684 - GFF1841 0.43 -1.2
704,684 - GFF1841 0.43 -1.6
704,684 - GFF1841 0.43 -0.4
704,684 - GFF1841 0.43 -1.2

Or see this region's nucleotide sequence