Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1733

Experiment: Ying_all64 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1731 and GFF1732 are separated by 90 nucleotidesGFF1732 and GFF1733 are separated by 8 nucleotidesGFF1733 and GFF1734 are separated by 14 nucleotidesGFF1734 and GFF1735 are separated by 7 nucleotides GFF1731 - Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family, at 585,897 to 586,304 GFF1731 GFF1732 - Putative predicted metal-dependent hydrolase, at 586,395 to 587,288 GFF1732 GFF1733 - 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51), at 587,297 to 588,046 GFF1733 GFF1734 - Histidinol-phosphatase (EC 3.1.3.15), at 588,061 to 588,645 GFF1734 GFF1735 - Glycyl-tRNA synthetase beta chain (EC 6.1.1.14), at 588,653 to 590,767 GFF1735 Position (kb) 587 588 589Strain fitness (log2 ratio) -2 -1 0 1at 586.320 kb on + strandat 586.320 kb on + strandat 586.321 kb on - strandat 586.321 kb on - strandat 586.321 kb on - strandat 586.330 kb on + strandat 586.330 kb on + strandat 586.330 kb on + strandat 586.330 kb on + strandat 586.330 kb on + strandat 586.330 kb on + strandat 586.330 kb on + strandat 586.331 kb on - strandat 586.331 kb on - strandat 586.331 kb on - strandat 586.534 kb on + strand, within GFF1732at 586.534 kb on + strand, within GFF1732at 586.534 kb on + strand, within GFF1732at 586.535 kb on - strand, within GFF1732at 586.535 kb on - strand, within GFF1732at 586.535 kb on - strand, within GFF1732at 586.535 kb on - strand, within GFF1732at 586.645 kb on + strand, within GFF1732at 586.645 kb on + strand, within GFF1732at 586.646 kb on - strand, within GFF1732at 586.879 kb on + strand, within GFF1732at 586.879 kb on + strand, within GFF1732at 586.880 kb on - strand, within GFF1732at 587.095 kb on + strand, within GFF1732at 587.095 kb on + strand, within GFF1732at 587.095 kb on + strand, within GFF1732at 587.096 kb on - strand, within GFF1732at 587.096 kb on - strand, within GFF1732at 587.096 kb on - strand, within GFF1732at 587.096 kb on - strand, within GFF1732at 587.096 kb on - strand, within GFF1732at 587.096 kb on - strand, within GFF1732at 587.310 kb on + strandat 587.311 kb on - strandat 587.538 kb on + strand, within GFF1733at 587.538 kb on + strand, within GFF1733at 587.539 kb on - strand, within GFF1733at 587.539 kb on - strand, within GFF1733at 587.539 kb on - strand, within GFF1733at 587.715 kb on + strand, within GFF1733at 587.715 kb on + strand, within GFF1733at 587.715 kb on + strand, within GFF1733at 587.715 kb on + strand, within GFF1733at 587.715 kb on + strand, within GFF1733at 587.715 kb on + strand, within GFF1733at 587.715 kb on + strand, within GFF1733at 587.715 kb on + strand, within GFF1733at 587.715 kb on + strand, within GFF1733at 587.715 kb on + strand, within GFF1733at 587.715 kb on + strand, within GFF1733at 587.715 kb on + strand, within GFF1733at 587.716 kb on - strand, within GFF1733at 587.716 kb on - strand, within GFF1733at 587.716 kb on - strand, within GFF1733at 587.716 kb on - strand, within GFF1733at 587.716 kb on - strand, within GFF1733at 587.739 kb on + strand, within GFF1733at 587.739 kb on + strand, within GFF1733at 587.739 kb on + strand, within GFF1733at 587.739 kb on + strand, within GFF1733at 587.739 kb on + strand, within GFF1733at 587.739 kb on + strand, within GFF1733at 587.740 kb on - strand, within GFF1733at 587.740 kb on - strand, within GFF1733at 587.740 kb on - strand, within GFF1733at 587.740 kb on - strand, within GFF1733at 587.740 kb on - strand, within GFF1733at 587.740 kb on - strand, within GFF1733at 587.825 kb on - strand, within GFF1733at 587.928 kb on + strand, within GFF1733at 587.928 kb on + strand, within GFF1733at 587.928 kb on + strand, within GFF1733at 587.928 kb on + strand, within GFF1733at 587.928 kb on + strand, within GFF1733at 587.928 kb on + strand, within GFF1733at 587.928 kb on + strand, within GFF1733at 587.929 kb on - strand, within GFF1733at 587.929 kb on - strand, within GFF1733at 587.929 kb on - strand, within GFF1733at 587.929 kb on - strand, within GFF1733at 587.929 kb on - strand, within GFF1733at 587.929 kb on - strand, within GFF1733at 587.929 kb on - strand, within GFF1733at 587.929 kb on - strand, within GFF1733at 588.590 kb on + strandat 588.590 kb on + strandat 588.591 kb on - strandat 588.591 kb on - strandat 588.591 kb on - strandat 588.591 kb on - strandat 588.591 kb on - strandat 588.591 kb on - strandat 588.591 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3
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586,320 + -0.3
586,320 + -0.5
586,321 - -0.0
586,321 - +1.1
586,321 - -0.0
586,330 + -0.3
586,330 + -0.6
586,330 + -0.0
586,330 + -0.0
586,330 + +0.6
586,330 + -1.0
586,330 + -0.3
586,331 - -0.1
586,331 - +0.4
586,331 - -0.7
586,534 + GFF1732 0.16 +0.6
586,534 + GFF1732 0.16 +0.3
586,534 + GFF1732 0.16 +0.8
586,535 - GFF1732 0.16 -0.2
586,535 - GFF1732 0.16 +0.7
586,535 - GFF1732 0.16 -0.3
586,535 - GFF1732 0.16 +0.1
586,645 + GFF1732 0.28 -0.3
586,645 + GFF1732 0.28 +1.1
586,646 - GFF1732 0.28 -0.4
586,879 + GFF1732 0.54 +0.3
586,879 + GFF1732 0.54 +0.1
586,880 - GFF1732 0.54 +0.4
587,095 + GFF1732 0.78 +0.1
587,095 + GFF1732 0.78 -0.5
587,095 + GFF1732 0.78 +0.8
587,096 - GFF1732 0.78 +0.2
587,096 - GFF1732 0.78 -1.3
587,096 - GFF1732 0.78 +0.4
587,096 - GFF1732 0.78 -0.3
587,096 - GFF1732 0.78 -0.5
587,096 - GFF1732 0.78 +0.4
587,310 + -0.8
587,311 - +0.5
587,538 + GFF1733 0.32 -1.5
587,538 + GFF1733 0.32 -1.0
587,539 - GFF1733 0.32 -1.7
587,539 - GFF1733 0.32 -0.4
587,539 - GFF1733 0.32 +0.7
587,715 + GFF1733 0.56 -1.8
587,715 + GFF1733 0.56 +0.3
587,715 + GFF1733 0.56 -0.7
587,715 + GFF1733 0.56 -0.4
587,715 + GFF1733 0.56 -1.9
587,715 + GFF1733 0.56 +0.1
587,715 + GFF1733 0.56 -0.9
587,715 + GFF1733 0.56 -1.7
587,715 + GFF1733 0.56 -0.1
587,715 + GFF1733 0.56 -1.3
587,715 + GFF1733 0.56 -0.9
587,715 + GFF1733 0.56 -1.1
587,716 - GFF1733 0.56 -0.8
587,716 - GFF1733 0.56 -0.8
587,716 - GFF1733 0.56 -1.5
587,716 - GFF1733 0.56 +1.1
587,716 - GFF1733 0.56 -0.7
587,739 + GFF1733 0.59 -0.5
587,739 + GFF1733 0.59 -0.3
587,739 + GFF1733 0.59 -1.3
587,739 + GFF1733 0.59 -0.5
587,739 + GFF1733 0.59 -1.7
587,739 + GFF1733 0.59 -0.4
587,740 - GFF1733 0.59 +0.1
587,740 - GFF1733 0.59 -1.0
587,740 - GFF1733 0.59 +0.3
587,740 - GFF1733 0.59 +0.3
587,740 - GFF1733 0.59 -0.5
587,740 - GFF1733 0.59 -0.9
587,825 - GFF1733 0.70 -1.1
587,928 + GFF1733 0.84 -0.3
587,928 + GFF1733 0.84 -1.1
587,928 + GFF1733 0.84 -2.0
587,928 + GFF1733 0.84 -1.7
587,928 + GFF1733 0.84 -0.6
587,928 + GFF1733 0.84 -0.9
587,928 + GFF1733 0.84 -0.9
587,929 - GFF1733 0.84 -1.4
587,929 - GFF1733 0.84 +1.1
587,929 - GFF1733 0.84 -0.8
587,929 - GFF1733 0.84 -1.3
587,929 - GFF1733 0.84 -0.5
587,929 - GFF1733 0.84 +0.2
587,929 - GFF1733 0.84 -1.6
587,929 - GFF1733 0.84 -0.5
588,590 + +0.9
588,590 + +0.1
588,591 - -2.3
588,591 - +0.1
588,591 - +0.1
588,591 - +0.1
588,591 - +0.2
588,591 - -0.7
588,591 - +0.8

Or see this region's nucleotide sequence