Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1357

Experiment: Ying_all64 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1356 and GFF1357 are separated by 209 nucleotidesGFF1357 and GFF1358 are separated by 29 nucleotidesGFF1358 and GFF1359 are separated by 13 nucleotides GFF1356 - S-adenosylmethionine synthetase (EC 2.5.1.6), at 209,860 to 211,041 GFF1356 GFF1357 - Sensory box histidine kinase, at 211,251 to 213,275 GFF1357 GFF1358 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 213,305 to 214,093 GFF1358 GFF1359 - NADPH:quinone oxidoreductase, at 214,107 to 214,658 GFF1359 Position (kb) 211 212 213 214Strain fitness (log2 ratio) -2 -1 0 1 2at 211.039 kb on + strandat 211.039 kb on + strandat 211.100 kb on + strandat 211.135 kb on + strandat 211.136 kb on - strandat 211.167 kb on + strandat 211.175 kb on + strandat 211.175 kb on + strandat 211.175 kb on + strandat 211.175 kb on + strandat 211.175 kb on + strandat 211.175 kb on + strandat 211.175 kb on + strandat 211.175 kb on + strandat 211.175 kb on + strandat 211.175 kb on + strandat 211.175 kb on + strandat 211.175 kb on + strandat 211.176 kb on - strandat 211.176 kb on - strandat 211.176 kb on - strandat 211.176 kb on - strandat 211.235 kb on + strandat 211.235 kb on + strandat 211.235 kb on + strandat 211.235 kb on + strandat 211.235 kb on + strandat 211.235 kb on + strandat 211.235 kb on + strandat 211.236 kb on - strandat 211.236 kb on - strandat 211.236 kb on - strandat 211.236 kb on - strandat 211.236 kb on - strandat 211.236 kb on - strandat 211.723 kb on - strand, within GFF1357at 211.725 kb on + strand, within GFF1357at 211.725 kb on + strand, within GFF1357at 211.725 kb on + strand, within GFF1357at 211.725 kb on + strand, within GFF1357at 211.725 kb on + strand, within GFF1357at 211.726 kb on - strand, within GFF1357at 211.932 kb on + strand, within GFF1357at 211.932 kb on + strand, within GFF1357at 211.932 kb on + strand, within GFF1357at 211.932 kb on + strand, within GFF1357at 211.933 kb on - strand, within GFF1357at 211.933 kb on - strand, within GFF1357at 211.933 kb on - strand, within GFF1357at 211.947 kb on + strand, within GFF1357at 211.947 kb on + strand, within GFF1357at 211.948 kb on - strand, within GFF1357at 211.948 kb on - strand, within GFF1357at 212.139 kb on + strand, within GFF1357at 212.139 kb on + strand, within GFF1357at 212.139 kb on + strand, within GFF1357at 212.140 kb on - strand, within GFF1357at 212.140 kb on - strand, within GFF1357at 212.140 kb on - strand, within GFF1357at 212.140 kb on - strand, within GFF1357at 212.140 kb on - strand, within GFF1357at 212.140 kb on - strand, within GFF1357at 212.148 kb on + strand, within GFF1357at 212.148 kb on + strand, within GFF1357at 212.148 kb on + strand, within GFF1357at 212.149 kb on - strand, within GFF1357at 212.149 kb on - strand, within GFF1357at 212.149 kb on - strand, within GFF1357at 212.149 kb on - strand, within GFF1357at 212.149 kb on - strand, within GFF1357at 212.149 kb on - strand, within GFF1357at 212.241 kb on + strand, within GFF1357at 212.241 kb on + strand, within GFF1357at 212.241 kb on + strand, within GFF1357at 212.241 kb on + strand, within GFF1357at 212.241 kb on + strand, within GFF1357at 212.241 kb on + strand, within GFF1357at 212.241 kb on + strand, within GFF1357at 212.673 kb on + strand, within GFF1357at 212.673 kb on + strand, within GFF1357at 212.674 kb on - strand, within GFF1357at 212.674 kb on - strand, within GFF1357at 212.736 kb on + strand, within GFF1357at 212.736 kb on + strand, within GFF1357at 212.736 kb on + strand, within GFF1357at 212.737 kb on - strand, within GFF1357at 212.937 kb on + strand, within GFF1357at 212.937 kb on + strand, within GFF1357at 212.937 kb on + strand, within GFF1357at 212.937 kb on + strand, within GFF1357at 212.938 kb on - strand, within GFF1357at 212.938 kb on - strand, within GFF1357at 212.938 kb on - strand, within GFF1357at 212.938 kb on - strand, within GFF1357at 212.938 kb on - strand, within GFF1357at 212.938 kb on - strand, within GFF1357at 212.938 kb on - strand, within GFF1357at 213.009 kb on + strand, within GFF1357at 213.009 kb on + strand, within GFF1357at 213.009 kb on + strand, within GFF1357at 213.009 kb on + strand, within GFF1357at 213.009 kb on + strand, within GFF1357at 213.009 kb on + strand, within GFF1357at 213.010 kb on - strand, within GFF1357at 213.010 kb on - strand, within GFF1357at 213.010 kb on - strand, within GFF1357at 213.010 kb on - strand, within GFF1357at 213.010 kb on - strand, within GFF1357at 213.010 kb on - strand, within GFF1357at 213.010 kb on - strand, within GFF1357at 213.198 kb on + strandat 213.198 kb on + strandat 213.198 kb on + strandat 213.198 kb on + strandat 213.198 kb on + strandat 213.198 kb on + strandat 213.198 kb on + strandat 213.198 kb on + strandat 213.199 kb on - strandat 213.199 kb on - strandat 213.199 kb on - strandat 213.199 kb on - strandat 213.486 kb on + strand, within GFF1358at 213.487 kb on - strand, within GFF1358at 213.800 kb on + strand, within GFF1358at 213.801 kb on - strand, within GFF1358at 213.801 kb on - strand, within GFF1358at 213.801 kb on - strand, within GFF1358at 213.801 kb on - strand, within GFF1358at 213.801 kb on - strand, within GFF1358at 214.040 kb on + strandat 214.040 kb on + strandat 214.138 kb on + strandat 214.138 kb on + strandat 214.138 kb on + strandat 214.138 kb on + strandat 214.139 kb on - strandat 214.139 kb on - strandat 214.139 kb on - strandat 214.261 kb on + strand, within GFF1359at 214.261 kb on + strand, within GFF1359at 214.261 kb on + strand, within GFF1359

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3
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211,039 + +2.0
211,039 + +0.4
211,100 + -1.1
211,135 + +1.0
211,136 - +1.6
211,167 + +0.8
211,175 + -0.3
211,175 + +0.4
211,175 + -0.2
211,175 + -0.7
211,175 + +0.4
211,175 + +0.5
211,175 + +0.0
211,175 + +0.1
211,175 + -0.1
211,175 + -0.3
211,175 + -0.1
211,175 + +0.2
211,176 - +0.2
211,176 - +0.5
211,176 - -0.3
211,176 - -0.2
211,235 + +1.0
211,235 + +0.2
211,235 + -0.1
211,235 + -0.5
211,235 + -0.1
211,235 + -0.3
211,235 + +0.6
211,236 - +0.0
211,236 - +0.6
211,236 - +0.2
211,236 - -0.6
211,236 - -0.4
211,236 - +0.4
211,723 - GFF1357 0.23 -0.1
211,725 + GFF1357 0.23 +0.1
211,725 + GFF1357 0.23 +0.3
211,725 + GFF1357 0.23 -1.3
211,725 + GFF1357 0.23 +0.2
211,725 + GFF1357 0.23 -0.2
211,726 - GFF1357 0.23 -0.1
211,932 + GFF1357 0.34 -1.8
211,932 + GFF1357 0.34 -0.3
211,932 + GFF1357 0.34 +0.2
211,932 + GFF1357 0.34 -0.8
211,933 - GFF1357 0.34 +0.5
211,933 - GFF1357 0.34 -1.2
211,933 - GFF1357 0.34 -0.5
211,947 + GFF1357 0.34 +0.2
211,947 + GFF1357 0.34 +0.7
211,948 - GFF1357 0.34 -0.7
211,948 - GFF1357 0.34 +0.1
212,139 + GFF1357 0.44 -1.0
212,139 + GFF1357 0.44 +0.0
212,139 + GFF1357 0.44 +0.5
212,140 - GFF1357 0.44 -0.4
212,140 - GFF1357 0.44 +0.7
212,140 - GFF1357 0.44 -0.2
212,140 - GFF1357 0.44 +0.3
212,140 - GFF1357 0.44 +0.4
212,140 - GFF1357 0.44 +1.1
212,148 + GFF1357 0.44 +0.5
212,148 + GFF1357 0.44 +0.1
212,148 + GFF1357 0.44 -1.5
212,149 - GFF1357 0.44 -0.8
212,149 - GFF1357 0.44 -0.9
212,149 - GFF1357 0.44 +0.0
212,149 - GFF1357 0.44 +0.6
212,149 - GFF1357 0.44 -0.4
212,149 - GFF1357 0.44 -1.3
212,241 + GFF1357 0.49 +0.4
212,241 + GFF1357 0.49 +0.4
212,241 + GFF1357 0.49 -1.3
212,241 + GFF1357 0.49 +0.5
212,241 + GFF1357 0.49 -1.0
212,241 + GFF1357 0.49 +0.1
212,241 + GFF1357 0.49 -0.4
212,673 + GFF1357 0.70 +0.7
212,673 + GFF1357 0.70 +0.3
212,674 - GFF1357 0.70 -0.7
212,674 - GFF1357 0.70 +0.6
212,736 + GFF1357 0.73 +0.2
212,736 + GFF1357 0.73 +0.3
212,736 + GFF1357 0.73 +0.9
212,737 - GFF1357 0.73 -0.6
212,937 + GFF1357 0.83 -0.1
212,937 + GFF1357 0.83 -0.3
212,937 + GFF1357 0.83 -0.7
212,937 + GFF1357 0.83 -1.0
212,938 - GFF1357 0.83 -0.2
212,938 - GFF1357 0.83 +0.1
212,938 - GFF1357 0.83 -0.2
212,938 - GFF1357 0.83 +0.2
212,938 - GFF1357 0.83 -1.2
212,938 - GFF1357 0.83 +0.3
212,938 - GFF1357 0.83 +0.0
213,009 + GFF1357 0.87 +0.3
213,009 + GFF1357 0.87 -0.6
213,009 + GFF1357 0.87 +1.0
213,009 + GFF1357 0.87 -0.4
213,009 + GFF1357 0.87 +0.6
213,009 + GFF1357 0.87 -0.5
213,010 - GFF1357 0.87 +0.2
213,010 - GFF1357 0.87 +0.0
213,010 - GFF1357 0.87 -0.8
213,010 - GFF1357 0.87 -1.3
213,010 - GFF1357 0.87 -0.3
213,010 - GFF1357 0.87 +0.7
213,010 - GFF1357 0.87 +1.4
213,198 + -0.6
213,198 + +0.6
213,198 + +1.3
213,198 + +0.5
213,198 + -0.2
213,198 + +0.7
213,198 + -0.0
213,198 + +0.2
213,199 - -0.1
213,199 - +0.2
213,199 - -2.2
213,199 - +0.2
213,486 + GFF1358 0.23 +0.8
213,487 - GFF1358 0.23 +0.2
213,800 + GFF1358 0.63 +0.0
213,801 - GFF1358 0.63 -0.5
213,801 - GFF1358 0.63 +0.2
213,801 - GFF1358 0.63 -0.5
213,801 - GFF1358 0.63 -0.5
213,801 - GFF1358 0.63 -0.0
214,040 + -1.0
214,040 + +2.2
214,138 + -0.7
214,138 + +0.6
214,138 + -0.3
214,138 + +0.0
214,139 - -0.1
214,139 - +0.8
214,139 - +0.3
214,261 + GFF1359 0.28 -0.2
214,261 + GFF1359 0.28 +1.6
214,261 + GFF1359 0.28 -0.4

Or see this region's nucleotide sequence