Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1338

Experiment: Ying_all64 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1337 and GFF1338 are separated by 443 nucleotidesGFF1338 and GFF1339 overlap by 11 nucleotidesGFF1339 and GFF1340 overlap by 1 nucleotidesGFF1340 and GFF1341 are separated by 3 nucleotides GFF1337 - Type IV pilus biogenesis protein PilM, at 189,487 to 190,524 GFF1337 GFF1338 - Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-), at 190,968 to 193,265 GFF1338 GFF1339 - Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly, at 193,255 to 193,584 GFF1339 GFF1340 - hypothetical protein, at 193,584 to 193,826 GFF1340 GFF1341 - Diaminopimelate decarboxylase (EC 4.1.1.20), at 193,830 to 195,119 GFF1341 Position (kb) 190 191 192 193 194Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 190.037 kb on + strand, within GFF1337at 190.037 kb on + strand, within GFF1337at 190.037 kb on + strand, within GFF1337at 190.038 kb on - strand, within GFF1337at 190.038 kb on - strand, within GFF1337at 190.038 kb on - strand, within GFF1337at 190.214 kb on + strand, within GFF1337at 190.214 kb on + strand, within GFF1337at 190.214 kb on + strand, within GFF1337at 190.214 kb on + strand, within GFF1337at 190.214 kb on + strand, within GFF1337at 190.214 kb on + strand, within GFF1337at 190.214 kb on + strand, within GFF1337at 190.214 kb on + strand, within GFF1337at 190.214 kb on + strand, within GFF1337at 190.215 kb on - strand, within GFF1337at 190.215 kb on - strand, within GFF1337at 190.215 kb on - strand, within GFF1337at 190.215 kb on - strand, within GFF1337at 190.215 kb on - strand, within GFF1337at 190.215 kb on - strand, within GFF1337at 190.215 kb on - strand, within GFF1337at 190.215 kb on - strand, within GFF1337at 190.215 kb on - strand, within GFF1337at 190.215 kb on - strand, within GFF1337at 190.215 kb on - strand, within GFF1337at 190.215 kb on - strand, within GFF1337at 190.546 kb on + strandat 190.609 kb on - strandat 190.633 kb on + strandat 190.633 kb on + strandat 190.634 kb on - strandat 190.695 kb on + strandat 190.695 kb on + strandat 190.696 kb on - strandat 190.696 kb on - strandat 190.747 kb on + strandat 190.747 kb on + strandat 190.747 kb on + strandat 190.747 kb on + strandat 190.747 kb on + strandat 190.747 kb on + strandat 190.747 kb on + strandat 190.747 kb on + strandat 190.748 kb on - strandat 190.748 kb on - strandat 190.748 kb on - strandat 190.748 kb on - strandat 190.748 kb on - strandat 190.764 kb on + strandat 190.764 kb on + strandat 190.764 kb on + strandat 190.764 kb on + strandat 190.765 kb on - strandat 190.807 kb on - strandat 190.807 kb on - strandat 190.885 kb on + strandat 190.885 kb on + strandat 191.005 kb on - strandat 191.301 kb on + strand, within GFF1338at 191.302 kb on - strand, within GFF1338at 191.302 kb on - strand, within GFF1338at 191.322 kb on + strand, within GFF1338at 191.322 kb on + strand, within GFF1338at 191.322 kb on + strand, within GFF1338at 191.323 kb on - strand, within GFF1338at 191.323 kb on - strand, within GFF1338at 191.323 kb on - strand, within GFF1338at 191.337 kb on + strand, within GFF1338at 191.338 kb on - strand, within GFF1338at 191.338 kb on - strand, within GFF1338at 191.338 kb on - strand, within GFF1338at 191.400 kb on + strand, within GFF1338at 191.400 kb on + strand, within GFF1338at 191.400 kb on + strand, within GFF1338at 191.400 kb on + strand, within GFF1338at 191.401 kb on - strand, within GFF1338at 191.401 kb on - strand, within GFF1338at 191.401 kb on - strand, within GFF1338at 191.433 kb on + strand, within GFF1338at 191.434 kb on - strand, within GFF1338at 191.460 kb on + strand, within GFF1338at 191.538 kb on + strand, within GFF1338at 191.539 kb on - strand, within GFF1338at 191.754 kb on + strand, within GFF1338at 191.754 kb on + strand, within GFF1338at 191.811 kb on + strand, within GFF1338at 191.860 kb on - strand, within GFF1338at 192.312 kb on + strand, within GFF1338at 192.312 kb on + strand, within GFF1338at 192.313 kb on - strand, within GFF1338at 192.313 kb on - strand, within GFF1338at 192.376 kb on - strand, within GFF1338at 192.420 kb on + strand, within GFF1338at 192.421 kb on - strand, within GFF1338at 192.573 kb on + strand, within GFF1338at 192.711 kb on + strand, within GFF1338at 192.711 kb on + strand, within GFF1338at 192.855 kb on + strand, within GFF1338at 192.856 kb on - strand, within GFF1338at 192.907 kb on - strand, within GFF1338at 193.050 kb on + strandat 193.051 kb on - strandat 193.051 kb on - strandat 193.051 kb on - strandat 193.051 kb on - strandat 193.051 kb on - strandat 193.093 kb on - strandat 193.095 kb on + strandat 193.095 kb on + strandat 193.095 kb on + strandat 193.096 kb on - strandat 193.096 kb on - strandat 193.096 kb on - strandat 193.096 kb on - strandat 193.367 kb on + strand, within GFF1339at 193.367 kb on + strand, within GFF1339at 193.368 kb on - strand, within GFF1339at 193.368 kb on - strand, within GFF1339at 193.368 kb on - strand, within GFF1339at 193.368 kb on - strand, within GFF1339at 193.368 kb on - strand, within GFF1339at 193.368 kb on - strand, within GFF1339at 193.368 kb on - strand, within GFF1339at 193.368 kb on - strand, within GFF1339at 193.499 kb on + strand, within GFF1339at 193.569 kb on - strandat 193.585 kb on + strandat 193.585 kb on + strandat 193.585 kb on + strandat 193.585 kb on + strandat 193.586 kb on - strandat 193.586 kb on - strandat 193.586 kb on - strandat 193.586 kb on - strandat 193.586 kb on - strandat 193.619 kb on + strand, within GFF1340at 193.619 kb on + strand, within GFF1340at 193.619 kb on + strand, within GFF1340at 193.619 kb on + strand, within GFF1340at 193.619 kb on + strand, within GFF1340at 193.620 kb on - strand, within GFF1340at 193.620 kb on - strand, within GFF1340at 193.620 kb on - strand, within GFF1340at 193.620 kb on - strand, within GFF1340at 193.620 kb on - strand, within GFF1340at 193.620 kb on - strand, within GFF1340at 193.620 kb on - strand, within GFF1340at 193.705 kb on + strand, within GFF1340at 193.705 kb on + strand, within GFF1340at 193.706 kb on - strand, within GFF1340at 193.706 kb on - strand, within GFF1340at 193.706 kb on - strand, within GFF1340at 193.959 kb on + strand, within GFF1341at 194.034 kb on + strand, within GFF1341

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3
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190,037 + GFF1337 0.53 +2.0
190,037 + GFF1337 0.53 +0.3
190,037 + GFF1337 0.53 -0.0
190,038 - GFF1337 0.53 +0.7
190,038 - GFF1337 0.53 +0.4
190,038 - GFF1337 0.53 +0.5
190,214 + GFF1337 0.70 +0.9
190,214 + GFF1337 0.70 -0.6
190,214 + GFF1337 0.70 +1.0
190,214 + GFF1337 0.70 +0.5
190,214 + GFF1337 0.70 +1.0
190,214 + GFF1337 0.70 +0.4
190,214 + GFF1337 0.70 +1.3
190,214 + GFF1337 0.70 +0.1
190,214 + GFF1337 0.70 +0.4
190,215 - GFF1337 0.70 +0.7
190,215 - GFF1337 0.70 -1.0
190,215 - GFF1337 0.70 +0.2
190,215 - GFF1337 0.70 +1.0
190,215 - GFF1337 0.70 +0.8
190,215 - GFF1337 0.70 -1.0
190,215 - GFF1337 0.70 +0.0
190,215 - GFF1337 0.70 +0.3
190,215 - GFF1337 0.70 +0.5
190,215 - GFF1337 0.70 +0.6
190,215 - GFF1337 0.70 -0.1
190,215 - GFF1337 0.70 -0.0
190,546 + +1.4
190,609 - +0.3
190,633 + +1.4
190,633 + -0.4
190,634 - +0.1
190,695 + -0.2
190,695 + +0.1
190,696 - -0.0
190,696 - +1.6
190,747 + +0.5
190,747 + +0.3
190,747 + +0.4
190,747 + +0.7
190,747 + +0.8
190,747 + +2.6
190,747 + +0.6
190,747 + +0.3
190,748 - +0.4
190,748 - -0.1
190,748 - -0.0
190,748 - -0.4
190,748 - -0.0
190,764 + +0.2
190,764 + -0.1
190,764 + -0.0
190,764 + +1.0
190,765 - -0.4
190,807 - -0.9
190,807 - +0.1
190,885 + -0.5
190,885 + -1.0
191,005 - -1.0
191,301 + GFF1338 0.14 -1.4
191,302 - GFF1338 0.15 -2.3
191,302 - GFF1338 0.15 -0.0
191,322 + GFF1338 0.15 +1.0
191,322 + GFF1338 0.15 -1.5
191,322 + GFF1338 0.15 -0.8
191,323 - GFF1338 0.15 -1.8
191,323 - GFF1338 0.15 -0.2
191,323 - GFF1338 0.15 -0.6
191,337 + GFF1338 0.16 -1.0
191,338 - GFF1338 0.16 -1.8
191,338 - GFF1338 0.16 -0.7
191,338 - GFF1338 0.16 -0.7
191,400 + GFF1338 0.19 -0.8
191,400 + GFF1338 0.19 -0.0
191,400 + GFF1338 0.19 -0.6
191,400 + GFF1338 0.19 -1.7
191,401 - GFF1338 0.19 -0.5
191,401 - GFF1338 0.19 -1.4
191,401 - GFF1338 0.19 -1.2
191,433 + GFF1338 0.20 -0.9
191,434 - GFF1338 0.20 -0.0
191,460 + GFF1338 0.21 -1.2
191,538 + GFF1338 0.25 -1.3
191,539 - GFF1338 0.25 -1.0
191,754 + GFF1338 0.34 -3.1
191,754 + GFF1338 0.34 -0.9
191,811 + GFF1338 0.37 -0.0
191,860 - GFF1338 0.39 -0.8
192,312 + GFF1338 0.58 -0.6
192,312 + GFF1338 0.58 +1.0
192,313 - GFF1338 0.59 -0.0
192,313 - GFF1338 0.59 -1.0
192,376 - GFF1338 0.61 -0.3
192,420 + GFF1338 0.63 -0.0
192,421 - GFF1338 0.63 -0.9
192,573 + GFF1338 0.70 -1.2
192,711 + GFF1338 0.76 +1.0
192,711 + GFF1338 0.76 -0.7
192,855 + GFF1338 0.82 -1.8
192,856 - GFF1338 0.82 -1.6
192,907 - GFF1338 0.84 -1.0
193,050 + -0.6
193,051 - +1.6
193,051 - -0.2
193,051 - -0.3
193,051 - -1.8
193,051 - -1.2
193,093 - -1.3
193,095 + -1.3
193,095 + -0.9
193,095 + +0.3
193,096 - -1.5
193,096 - +0.1
193,096 - -0.7
193,096 - -0.0
193,367 + GFF1339 0.34 -0.6
193,367 + GFF1339 0.34 -1.9
193,368 - GFF1339 0.34 -2.2
193,368 - GFF1339 0.34 -1.3
193,368 - GFF1339 0.34 -1.7
193,368 - GFF1339 0.34 -1.3
193,368 - GFF1339 0.34 -2.0
193,368 - GFF1339 0.34 -1.0
193,368 - GFF1339 0.34 -1.1
193,368 - GFF1339 0.34 -1.7
193,499 + GFF1339 0.74 -0.6
193,569 - -2.5
193,585 + +0.1
193,585 + -0.3
193,585 + +0.4
193,585 + -0.4
193,586 - -0.4
193,586 - -0.5
193,586 - -0.2
193,586 - -0.5
193,586 - -0.2
193,619 + GFF1340 0.14 +0.4
193,619 + GFF1340 0.14 -5.3
193,619 + GFF1340 0.14 -2.3
193,619 + GFF1340 0.14 -0.6
193,619 + GFF1340 0.14 +2.0
193,620 - GFF1340 0.15 -0.2
193,620 - GFF1340 0.15 -0.5
193,620 - GFF1340 0.15 +0.5
193,620 - GFF1340 0.15 +0.1
193,620 - GFF1340 0.15 -0.1
193,620 - GFF1340 0.15 -0.3
193,620 - GFF1340 0.15 +0.2
193,705 + GFF1340 0.50 -4.1
193,705 + GFF1340 0.50 -3.5
193,706 - GFF1340 0.50 -2.8
193,706 - GFF1340 0.50 -2.0
193,706 - GFF1340 0.50 -5.6
193,959 + GFF1341 0.10 -0.6
194,034 + GFF1341 0.16 -2.3

Or see this region's nucleotide sequence