Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1283

Experiment: Ying_all64 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1281 and GFF1282 are separated by 101 nucleotidesGFF1282 and GFF1283 are separated by 43 nucleotidesGFF1283 and GFF1284 are separated by 8 nucleotidesGFF1284 and GFF1285 are separated by 8 nucleotidesGFF1285 and GFF1286 overlap by 4 nucleotides GFF1281 - Leader peptidase (Prepilin peptidase) (EC 3.4.23.43) / N-methyltransferase (EC 2.1.1.-), at 139,361 to 140,224 GFF1281 GFF1282 - Dephospho-CoA kinase (EC 2.7.1.24), at 140,326 to 140,835 GFF1282 GFF1283 - FIG002842: hypothetical protein, at 140,879 to 141,634 GFF1283 GFF1284 - FIG003276: zinc-binding protein, at 141,643 to 141,846 GFF1284 GFF1285 - Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-), at 141,855 to 142,307 GFF1285 GFF1286 - putative ATP/GTP-binding protein, at 142,304 to 143,182 GFF1286 Position (kb) 140 141 142Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 139.952 kb on + strand, within GFF1281at 139.952 kb on + strand, within GFF1281at 139.953 kb on - strand, within GFF1281at 140.135 kb on + strand, within GFF1281at 140.135 kb on + strand, within GFF1281at 140.135 kb on + strand, within GFF1281at 140.135 kb on + strand, within GFF1281at 140.135 kb on + strand, within GFF1281at 140.135 kb on + strand, within GFF1281at 140.135 kb on + strand, within GFF1281at 140.135 kb on + strand, within GFF1281at 140.135 kb on + strand, within GFF1281at 140.135 kb on + strand, within GFF1281at 140.135 kb on + strand, within GFF1281at 140.135 kb on + strand, within GFF1281at 140.135 kb on + strand, within GFF1281at 140.135 kb on + strand, within GFF1281at 140.135 kb on + strand, within GFF1281at 140.135 kb on + strand, within GFF1281at 140.136 kb on - strand, within GFF1281at 140.136 kb on - strand, within GFF1281at 140.136 kb on - strand, within GFF1281at 140.136 kb on - strand, within GFF1281at 140.136 kb on - strand, within GFF1281at 140.136 kb on - strand, within GFF1281at 140.136 kb on - strand, within GFF1281at 140.136 kb on - strand, within GFF1281at 140.136 kb on - strand, within GFF1281at 140.136 kb on - strand, within GFF1281at 140.136 kb on - strand, within GFF1281at 140.136 kb on - strand, within GFF1281at 140.136 kb on - strand, within GFF1281at 140.832 kb on - strandat 140.888 kb on + strandat 140.888 kb on + strandat 140.888 kb on + strandat 140.888 kb on + strandat 140.888 kb on + strandat 140.889 kb on - strandat 140.889 kb on - strandat 140.895 kb on - strandat 140.921 kb on + strandat 140.921 kb on + strandat 140.921 kb on + strandat 140.921 kb on + strandat 140.921 kb on + strandat 140.921 kb on + strandat 140.922 kb on - strandat 140.922 kb on - strandat 140.922 kb on - strandat 140.993 kb on + strand, within GFF1283at 140.994 kb on - strand, within GFF1283at 140.994 kb on - strand, within GFF1283at 141.043 kb on + strand, within GFF1283at 141.179 kb on + strand, within GFF1283at 141.287 kb on + strand, within GFF1283at 141.287 kb on + strand, within GFF1283at 141.288 kb on - strand, within GFF1283at 141.288 kb on - strand, within GFF1283at 141.288 kb on - strand, within GFF1283at 141.288 kb on - strand, within GFF1283at 141.290 kb on + strand, within GFF1283at 141.290 kb on + strand, within GFF1283at 141.290 kb on + strand, within GFF1283at 141.290 kb on + strand, within GFF1283at 141.290 kb on + strand, within GFF1283at 141.290 kb on + strand, within GFF1283at 141.290 kb on + strand, within GFF1283at 141.290 kb on + strand, within GFF1283at 141.290 kb on + strand, within GFF1283at 141.291 kb on - strand, within GFF1283at 141.712 kb on + strand, within GFF1284at 141.713 kb on - strand, within GFF1284at 141.713 kb on - strand, within GFF1284at 142.028 kb on - strand, within GFF1285at 142.157 kb on - strand, within GFF1285at 142.165 kb on + strand, within GFF1285at 142.165 kb on + strand, within GFF1285at 142.165 kb on + strand, within GFF1285at 142.165 kb on + strand, within GFF1285at 142.165 kb on + strand, within GFF1285at 142.165 kb on + strand, within GFF1285at 142.165 kb on + strand, within GFF1285at 142.166 kb on - strand, within GFF1285at 142.166 kb on - strand, within GFF1285at 142.166 kb on - strand, within GFF1285at 142.166 kb on - strand, within GFF1285at 142.166 kb on - strand, within GFF1285at 142.166 kb on - strand, within GFF1285at 142.166 kb on - strand, within GFF1285at 142.166 kb on - strand, within GFF1285at 142.166 kb on - strand, within GFF1285at 142.166 kb on - strand, within GFF1285at 142.166 kb on - strand, within GFF1285at 142.333 kb on - strandat 142.350 kb on + strandat 142.473 kb on + strand, within GFF1286at 142.473 kb on + strand, within GFF1286at 142.473 kb on + strand, within GFF1286at 142.473 kb on + strand, within GFF1286at 142.474 kb on - strand, within GFF1286at 142.474 kb on - strand, within GFF1286at 142.494 kb on + strand, within GFF1286at 142.494 kb on + strand, within GFF1286at 142.494 kb on + strand, within GFF1286at 142.494 kb on + strand, within GFF1286at 142.494 kb on + strand, within GFF1286at 142.494 kb on + strand, within GFF1286at 142.494 kb on + strand, within GFF1286at 142.495 kb on - strand, within GFF1286at 142.495 kb on - strand, within GFF1286at 142.495 kb on - strand, within GFF1286at 142.587 kb on + strand, within GFF1286at 142.587 kb on + strand, within GFF1286at 142.587 kb on + strand, within GFF1286at 142.587 kb on + strand, within GFF1286at 142.587 kb on + strand, within GFF1286at 142.588 kb on - strand, within GFF1286at 142.588 kb on - strand, within GFF1286at 142.588 kb on - strand, within GFF1286at 142.588 kb on - strand, within GFF1286at 142.588 kb on - strand, within GFF1286at 142.608 kb on + strand, within GFF1286at 142.608 kb on + strand, within GFF1286at 142.608 kb on + strand, within GFF1286at 142.609 kb on - strand, within GFF1286at 142.609 kb on - strand, within GFF1286

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3
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139,952 + GFF1281 0.68 +2.6
139,952 + GFF1281 0.68 -0.3
139,953 - GFF1281 0.69 -0.6
140,135 + GFF1281 0.90 -0.3
140,135 + GFF1281 0.90 +0.6
140,135 + GFF1281 0.90 -0.0
140,135 + GFF1281 0.90 -0.1
140,135 + GFF1281 0.90 +0.6
140,135 + GFF1281 0.90 -0.0
140,135 + GFF1281 0.90 -0.4
140,135 + GFF1281 0.90 -0.0
140,135 + GFF1281 0.90 -0.0
140,135 + GFF1281 0.90 +0.1
140,135 + GFF1281 0.90 -0.4
140,135 + GFF1281 0.90 -0.1
140,135 + GFF1281 0.90 +0.8
140,135 + GFF1281 0.90 -0.6
140,135 + GFF1281 0.90 -0.9
140,135 + GFF1281 0.90 -0.2
140,136 - GFF1281 0.90 +0.2
140,136 - GFF1281 0.90 +0.5
140,136 - GFF1281 0.90 -0.2
140,136 - GFF1281 0.90 -0.1
140,136 - GFF1281 0.90 +0.2
140,136 - GFF1281 0.90 -0.4
140,136 - GFF1281 0.90 -0.3
140,136 - GFF1281 0.90 +1.0
140,136 - GFF1281 0.90 +0.7
140,136 - GFF1281 0.90 -0.7
140,136 - GFF1281 0.90 +0.7
140,136 - GFF1281 0.90 +0.0
140,136 - GFF1281 0.90 -0.1
140,832 - -1.0
140,888 + -0.2
140,888 + +0.2
140,888 + -0.2
140,888 + -1.0
140,888 + -0.3
140,889 - -1.8
140,889 - +1.1
140,895 - +0.4
140,921 + -0.9
140,921 + +0.6
140,921 + +0.8
140,921 + +0.2
140,921 + +0.9
140,921 + +0.1
140,922 - -1.0
140,922 - +0.5
140,922 - -0.0
140,993 + GFF1283 0.15 +0.6
140,994 - GFF1283 0.15 -0.2
140,994 - GFF1283 0.15 -0.2
141,043 + GFF1283 0.22 -0.1
141,179 + GFF1283 0.40 +0.9
141,287 + GFF1283 0.54 +0.1
141,287 + GFF1283 0.54 +0.7
141,288 - GFF1283 0.54 +0.1
141,288 - GFF1283 0.54 -1.6
141,288 - GFF1283 0.54 +2.7
141,288 - GFF1283 0.54 +0.1
141,290 + GFF1283 0.54 +0.6
141,290 + GFF1283 0.54 -1.0
141,290 + GFF1283 0.54 +1.1
141,290 + GFF1283 0.54 -0.7
141,290 + GFF1283 0.54 +0.0
141,290 + GFF1283 0.54 +0.1
141,290 + GFF1283 0.54 +1.6
141,290 + GFF1283 0.54 -0.1
141,290 + GFF1283 0.54 -0.1
141,291 - GFF1283 0.54 +0.7
141,712 + GFF1284 0.34 -0.3
141,713 - GFF1284 0.34 -0.1
141,713 - GFF1284 0.34 -1.2
142,028 - GFF1285 0.38 +5.1
142,157 - GFF1285 0.67 +1.4
142,165 + GFF1285 0.68 +0.4
142,165 + GFF1285 0.68 -0.6
142,165 + GFF1285 0.68 +1.4
142,165 + GFF1285 0.68 +0.1
142,165 + GFF1285 0.68 -0.4
142,165 + GFF1285 0.68 +1.0
142,165 + GFF1285 0.68 -0.4
142,166 - GFF1285 0.69 +0.6
142,166 - GFF1285 0.69 -0.0
142,166 - GFF1285 0.69 -0.5
142,166 - GFF1285 0.69 -0.6
142,166 - GFF1285 0.69 -0.4
142,166 - GFF1285 0.69 +0.7
142,166 - GFF1285 0.69 +0.5
142,166 - GFF1285 0.69 +2.0
142,166 - GFF1285 0.69 -0.6
142,166 - GFF1285 0.69 -0.4
142,166 - GFF1285 0.69 +1.4
142,333 - +0.1
142,350 + -0.2
142,473 + GFF1286 0.19 -0.0
142,473 + GFF1286 0.19 -1.1
142,473 + GFF1286 0.19 +0.4
142,473 + GFF1286 0.19 -0.3
142,474 - GFF1286 0.19 -0.4
142,474 - GFF1286 0.19 -0.4
142,494 + GFF1286 0.22 +0.5
142,494 + GFF1286 0.22 -0.3
142,494 + GFF1286 0.22 +0.4
142,494 + GFF1286 0.22 +0.5
142,494 + GFF1286 0.22 -0.2
142,494 + GFF1286 0.22 -0.1
142,494 + GFF1286 0.22 +0.3
142,495 - GFF1286 0.22 +0.3
142,495 - GFF1286 0.22 +1.0
142,495 - GFF1286 0.22 -0.6
142,587 + GFF1286 0.32 -0.6
142,587 + GFF1286 0.32 +0.6
142,587 + GFF1286 0.32 -0.1
142,587 + GFF1286 0.32 -0.2
142,587 + GFF1286 0.32 -0.9
142,588 - GFF1286 0.32 -0.1
142,588 - GFF1286 0.32 +0.2
142,588 - GFF1286 0.32 +0.8
142,588 - GFF1286 0.32 +0.7
142,588 - GFF1286 0.32 +0.1
142,608 + GFF1286 0.35 +0.6
142,608 + GFF1286 0.35 +0.7
142,608 + GFF1286 0.35 -0.8
142,609 - GFF1286 0.35 -0.1
142,609 - GFF1286 0.35 +0.1

Or see this region's nucleotide sequence