Experiment: Ying_all64 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1065 and GFF1066 are separated by 450 nucleotides GFF1066 and GFF1067 are separated by 63 nucleotides GFF1067 and GFF1068 are separated by 8 nucleotides
GFF1065 - SAM-dependent methyltransferases, at 809,091 to 809,255
GFF1065
GFF1066 - Mobile element protein, at 809,706 to 811,232
GFF1066
GFF1067 - Mobile element protein, at 811,296 to 811,469
GFF1067
GFF1068 - hypothetical protein, at 811,478 to 817,912
GFF1068
Position (kb) 809
810
811
812 Strain fitness (log2 ratio) -1
0
1 at 808.850 kb on + strand at 808.850 kb on + strand at 808.850 kb on + strand at 808.851 kb on - strand at 808.936 kb on + strand at 808.937 kb on - strand at 809.136 kb on + strand, within GFF1065 at 809.137 kb on - strand, within GFF1065 at 809.137 kb on - strand, within GFF1065 at 809.137 kb on - strand, within GFF1065 at 809.143 kb on + strand, within GFF1065 at 809.174 kb on + strand, within GFF1065 at 809.174 kb on + strand, within GFF1065 at 809.174 kb on + strand, within GFF1065 at 809.174 kb on + strand, within GFF1065 at 809.175 kb on - strand, within GFF1065 at 809.175 kb on - strand, within GFF1065 at 809.353 kb on + strand at 809.353 kb on + strand at 809.354 kb on - strand at 809.354 kb on - strand at 809.416 kb on + strand at 809.416 kb on + strand at 809.417 kb on - strand at 809.417 kb on - strand at 809.417 kb on - strand at 809.548 kb on + strand at 809.549 kb on - strand at 809.549 kb on - strand at 809.572 kb on - strand at 809.572 kb on - strand at 809.665 kb on + strand at 809.665 kb on + strand at 809.666 kb on - strand at 809.666 kb on - strand at 809.707 kb on + strand at 809.708 kb on - strand at 809.708 kb on - strand at 809.791 kb on + strand at 809.791 kb on + strand at 809.792 kb on - strand at 809.792 kb on - strand at 810.002 kb on - strand, within GFF1066 at 810.002 kb on - strand, within GFF1066 at 810.157 kb on + strand, within GFF1066 at 810.157 kb on + strand, within GFF1066 at 810.157 kb on + strand, within GFF1066 at 810.158 kb on - strand, within GFF1066 at 810.158 kb on - strand, within GFF1066 at 810.443 kb on - strand, within GFF1066 at 810.676 kb on + strand, within GFF1066 at 810.829 kb on + strand, within GFF1066 at 810.830 kb on - strand, within GFF1066 at 810.830 kb on - strand, within GFF1066 at 811.297 kb on + strand at 811.297 kb on + strand at 811.298 kb on - strand at 811.474 kb on - strand at 811.511 kb on - strand at 811.721 kb on + strand at 811.721 kb on + strand at 811.721 kb on + strand at 811.722 kb on - strand at 811.722 kb on - strand at 812.059 kb on - strand at 812.073 kb on + strand at 812.148 kb on + strand, within GFF1068 at 812.148 kb on + strand, within GFF1068 at 812.148 kb on + strand, within GFF1068 at 812.149 kb on - strand, within GFF1068 at 812.149 kb on - strand, within GFF1068 at 812.149 kb on - strand, within GFF1068
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3 remove 808,850 + -1.0 808,850 + +0.2 808,850 + +0.5 808,851 - +0.0 808,936 + -1.6 808,937 - +0.3 809,136 + GFF1065 0.27 +0.4 809,137 - GFF1065 0.28 +0.0 809,137 - GFF1065 0.28 -0.1 809,137 - GFF1065 0.28 +0.6 809,143 + GFF1065 0.32 +0.4 809,174 + GFF1065 0.50 +0.8 809,174 + GFF1065 0.50 +0.5 809,174 + GFF1065 0.50 +0.7 809,174 + GFF1065 0.50 -1.0 809,175 - GFF1065 0.51 -0.4 809,175 - GFF1065 0.51 +0.5 809,353 + +1.0 809,353 + -0.3 809,354 - +0.1 809,354 - +0.1 809,416 + +1.0 809,416 + -0.0 809,417 - -0.2 809,417 - +0.4 809,417 - +0.4 809,548 + +1.4 809,549 - -0.6 809,549 - -0.3 809,572 - -0.0 809,572 - -0.4 809,665 + +1.0 809,665 + +0.3 809,666 - +0.9 809,666 - +0.4 809,707 + +0.1 809,708 - -1.6 809,708 - -0.5 809,791 + +0.4 809,791 + -0.0 809,792 - +0.3 809,792 - -0.1 810,002 - GFF1066 0.19 +0.1 810,002 - GFF1066 0.19 -0.5 810,157 + GFF1066 0.30 +0.3 810,157 + GFF1066 0.30 +0.4 810,157 + GFF1066 0.30 -0.0 810,158 - GFF1066 0.30 -0.6 810,158 - GFF1066 0.30 +0.6 810,443 - GFF1066 0.48 +0.6 810,676 + GFF1066 0.64 +0.2 810,829 + GFF1066 0.74 -0.1 810,830 - GFF1066 0.74 +0.3 810,830 - GFF1066 0.74 -0.2 811,297 + +0.6 811,297 + -0.8 811,298 - -0.8 811,474 - +0.1 811,511 - +0.2 811,721 + -0.6 811,721 + +0.6 811,721 + -0.3 811,722 - +1.7 811,722 - +0.1 812,059 - -0.1 812,073 + +0.2 812,148 + GFF1068 0.10 -0.3 812,148 + GFF1068 0.10 +0.1 812,148 + GFF1068 0.10 +0.1 812,149 - GFF1068 0.10 +0.3 812,149 - GFF1068 0.10 -0.6 812,149 - GFF1068 0.10 +0.3
Or see this region's nucleotide sequence